Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   SVA_RS05385 Genome accession   NZ_AP014936
Coordinates   1117897..1119270 (-) Length   457 a.a.
NCBI ID   WP_096459904.1    Uniprot ID   A0A1B4V8E8
Organism   Sulfurifustis variabilis strain skN76     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1112897..1124270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SVA_RS05355 (SVA_1101) ccmB 1113337..1114017 (-) 681 WP_179948810.1 heme exporter protein CcmB -
  SVA_RS05360 (SVA_1102) ccmA 1114014..1114712 (-) 699 WP_197703381.1 cytochrome c biogenesis heme-transporting ATPase CcmA -
  SVA_RS05375 (SVA_1105) - 1115006..1117069 (-) 2064 WP_148665391.1 O-antigen ligase family protein -
  SVA_RS05380 (SVA_1106) - 1117039..1117386 (-) 348 WP_231971891.1 pilin -
  SVA_RS20390 - 1117401..1117503 (-) 103 Protein_1096 pilin -
  SVA_RS05385 (SVA_1107) pilR 1117897..1119270 (-) 1374 WP_096459904.1 sigma-54-dependent transcriptional regulator Regulator
  SVA_RS05390 (SVA_1108) - 1119267..1120934 (-) 1668 WP_096459906.1 sensor histidine kinase -
  SVA_RS05395 (SVA_1109) - 1120987..1121220 (-) 234 WP_096459909.1 PP0621 family protein -
  SVA_RS05405 (SVA_1111) ispB 1121422..1122390 (-) 969 WP_096459912.1 octaprenyl diphosphate synthase -
  SVA_RS05410 (SVA_1112) rplU 1122550..1122897 (+) 348 WP_096462835.1 50S ribosomal protein L21 -
  SVA_RS05415 (SVA_1113) rpmA 1122916..1123173 (+) 258 WP_096459915.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50429.91 Da        Isoelectric Point: 5.3055

>NTDB_id=67423 SVA_RS05385 WP_096459904.1 1117897..1119270(-) (pilR) [Sulfurifustis variabilis strain skN76]
MSKPKHQVLVVDDEPDIREVLELTLGRMNLETRTASNIEEAKYLLDEFKFDLCLTDMRLPDGNGIELVRFLQDKYPYLPV
AVITAYGNMETAVAALKAGAFDFVSKPLDLNDLRNIVRSALRVAQSPTLTAAVAGQAATASPATRRLLGESEAMQKVRGM
IERLARGQAPVYISGESGTGKELAARLIHELGPRSDKPFVPVNCGAIPEQLMESEFFGHKKGSFTGAVQDKEGLFKAADA
GTLFLDEVGDLPLTMQVKLLRAIQEKSIRPVGSQTEIKVDVRVVCATHKDLNELVRQGRFRQDLYYRLNVIQLHIPPLRE
RAEDIPLLADQLCGRLAGNMGLKPPALTPDAQGVLTRYGFPGNVRELENVLERALTLCNGSEITPEDLQLPVASQEERET
ENLLSGEESLDDYLERIERVAIESALARTSQNKTAAAKLLGISFRALRYKLEKLGIT

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=67423 SVA_RS05385 WP_096459904.1 1117897..1119270(-) (pilR) [Sulfurifustis variabilis strain skN76]
ATGAGCAAGCCCAAGCATCAGGTGCTCGTCGTCGACGACGAGCCCGACATCCGGGAGGTCCTGGAGCTGACCCTCGGCCG
CATGAATTTGGAGACCCGTACTGCCTCGAACATCGAGGAGGCGAAGTACCTCCTGGATGAATTCAAGTTCGACCTGTGCC
TGACCGACATGCGCCTGCCCGACGGAAACGGCATCGAGCTGGTCCGCTTCCTCCAGGACAAATACCCCTATCTCCCCGTC
GCCGTCATCACCGCGTACGGCAACATGGAAACGGCGGTCGCCGCGCTCAAGGCGGGCGCCTTCGACTTCGTCTCCAAGCC
CCTCGACCTCAACGACCTGCGCAACATCGTCCGGTCCGCCCTCCGGGTCGCGCAGTCGCCCACCCTCACGGCGGCCGTCG
CCGGCCAGGCCGCGACGGCGTCACCGGCCACGCGTCGGCTGCTCGGCGAGTCCGAGGCGATGCAGAAGGTGCGGGGAATG
ATCGAGCGCCTCGCGCGGGGACAGGCACCGGTCTACATCAGCGGGGAATCCGGGACCGGCAAGGAGCTTGCCGCGCGCCT
GATTCACGAGCTCGGCCCGCGCAGCGACAAACCGTTCGTGCCCGTCAATTGCGGCGCGATCCCGGAACAGCTCATGGAAA
GCGAGTTCTTCGGGCACAAGAAAGGCAGCTTCACGGGCGCCGTGCAGGACAAGGAGGGGCTGTTCAAGGCCGCGGACGCG
GGCACGCTGTTCCTCGACGAGGTCGGCGACCTGCCGCTCACGATGCAGGTGAAGCTCCTGCGCGCGATCCAGGAGAAGTC
CATCCGGCCGGTCGGCTCCCAGACGGAGATCAAGGTCGACGTGCGCGTCGTCTGCGCGACCCACAAGGACCTGAACGAGC
TGGTCCGGCAGGGCCGGTTTCGGCAGGATCTTTATTACCGGCTGAACGTGATTCAGCTGCACATTCCTCCCCTTCGGGAG
CGCGCCGAGGACATCCCGCTGCTGGCCGACCAGCTCTGCGGCCGGCTGGCGGGCAACATGGGTCTGAAACCGCCTGCGCT
CACGCCCGATGCCCAGGGCGTACTCACGCGTTACGGCTTCCCGGGCAACGTGCGCGAGCTCGAAAACGTGCTCGAACGCG
CCCTCACGCTGTGTAACGGCAGCGAAATCACGCCGGAGGACCTGCAGCTCCCTGTCGCCTCCCAGGAAGAGCGCGAGACC
GAGAACCTCCTGTCCGGCGAGGAATCCCTCGACGACTACCTCGAGCGGATCGAGCGGGTCGCCATCGAGAGCGCCCTGGC
GCGCACCAGCCAGAACAAGACCGCGGCGGCCAAGCTGCTGGGGATCAGCTTTCGGGCGCTGCGCTACAAGCTCGAGAAAC
TGGGCATCACCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(147-313)

Bacterial regulatory protein, Fis family (HTH_8)

(414-454)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B4V8E8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.389

98.906

0.617
  pilR Acinetobacter baumannii strain A118

47.881

100

0.495
  luxO Vibrio cholerae strain A1552

40

90.81

0.363

Multiple sequence alignment