Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OG955_RS18990 Genome accession   NZ_CP109313
Coordinates   4180334..4181311 (-) Length   325 a.a.
NCBI ID   WP_330246160.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01602     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 4175334..4186311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG955_RS18970 (OG955_18955) mshB 4175508..4176461 (-) 954 WP_406322460.1 N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha- D-glucopyranoside deacetylase -
  OG955_RS18975 (OG955_18960) - 4176525..4176719 (-) 195 WP_030915260.1 hypothetical protein -
  OG955_RS18980 (OG955_18965) - 4176923..4179055 (+) 2133 WP_406504383.1 prolyl oligopeptidase family serine peptidase -
  OG955_RS18985 (OG955_18970) - 4179208..4180344 (-) 1137 WP_330246161.1 dipeptide ABC transporter ATP-binding protein -
  OG955_RS18990 (OG955_18975) amiE 4180334..4181311 (-) 978 WP_330246160.1 ABC transporter ATP-binding protein Regulator
  OG955_RS18995 (OG955_18980) - 4181325..4182299 (-) 975 WP_030915250.1 ABC transporter permease -
  OG955_RS19000 (OG955_18985) - 4182292..4183215 (-) 924 WP_267002285.1 ABC transporter permease -
  OG955_RS19005 (OG955_18990) - 4183311..4184951 (-) 1641 WP_406322455.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 35742.59 Da        Isoelectric Point: 6.5871

>NTDB_id=673945 OG955_RS18990 WP_330246160.1 4180334..4181311(-) (amiE) [Streptomyces sp. NBC_01602]
MLLEVRDLHVEFHTRDGVAKAVNGVNYSVAEGETLAVLGESGSGKSVTAQAIMGILDMPPGKISSGEIIFKGRDLLKLKA
EERRKIRGQEMAMIFQDALSSLNPVLSVGDQLGEMFVVHRGMSRKDARAKAIELMDRVRIPAAKERVGNYPHQFSGGMRQ
RIMIAMAMALEPSLIIADEPTTALDVTVQAQVMDLLAELQRELNMGLILITHDLGVVADVADYIAVMYAGRIVESAPVHE
IYKAPAHPYTKGLLQSIPRLDQKGQELYAIKGLPPNLLHIPPGCAFNPRCPLAQDICRGEVPPLFEVAQHRESACYFWKE
TLDAR

Nucleotide


Download         Length: 978 bp        

>NTDB_id=673945 OG955_RS18990 WP_330246160.1 4180334..4181311(-) (amiE) [Streptomyces sp. NBC_01602]
ATGTTGCTCGAAGTGCGCGATCTGCACGTGGAGTTCCACACCCGGGACGGGGTGGCCAAAGCCGTCAACGGGGTCAACTA
CTCGGTGGCCGAGGGTGAGACGCTCGCGGTCCTCGGCGAGTCCGGCTCCGGCAAGTCGGTCACCGCACAGGCGATCATGG
GCATTCTCGACATGCCGCCGGGGAAGATCAGCAGTGGCGAGATCATCTTCAAGGGCCGCGATCTGCTGAAGCTCAAGGCC
GAGGAGCGCCGGAAGATCCGCGGCCAGGAGATGGCCATGATCTTCCAGGACGCGCTGTCGTCCCTCAACCCCGTGCTCAG
CGTGGGGGACCAGCTCGGCGAGATGTTCGTCGTGCACCGAGGGATGTCCCGCAAGGACGCCCGGGCGAAGGCCATCGAGC
TGATGGACCGGGTCCGCATCCCGGCCGCGAAGGAACGTGTCGGGAACTACCCGCACCAGTTCTCCGGCGGCATGCGCCAG
CGCATCATGATCGCCATGGCGATGGCGCTGGAACCCTCGCTGATCATCGCGGACGAACCCACCACCGCCCTCGATGTGAC
CGTCCAGGCCCAGGTGATGGACCTGCTCGCGGAGCTCCAGCGCGAGCTCAACATGGGACTCATCCTTATCACCCACGACC
TGGGCGTGGTCGCGGACGTCGCCGACTACATCGCCGTGATGTACGCGGGCCGGATCGTGGAGTCGGCCCCTGTCCACGAG
ATCTACAAGGCCCCCGCCCACCCGTACACCAAGGGCCTCCTCCAGTCGATCCCACGGCTGGACCAGAAGGGCCAGGAGCT
GTACGCGATCAAGGGGCTGCCGCCCAACCTGCTGCACATCCCGCCCGGCTGCGCCTTCAACCCGCGCTGCCCGCTGGCCC
AGGACATCTGCCGTGGCGAGGTGCCGCCGCTGTTCGAGGTGGCCCAGCACCGCGAGAGCGCCTGCTACTTCTGGAAGGAG
ACGCTCGATGCACGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

47.975

98.769

0.474
  amiE Streptococcus thermophilus LMG 18311

47.352

98.769

0.468
  amiE Streptococcus thermophilus LMD-9

47.352

98.769

0.468
  oppD Streptococcus mutans UA159

48.101

97.231

0.468