Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   MTP21_RS04865 Genome accession   NZ_CP094880
Coordinates   1053991..1056249 (+) Length   752 a.a.
NCBI ID   WP_243976431.1    Uniprot ID   -
Organism   Vibrio natriegens strain WPAGA4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1048991..1061249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTP21_RS04840 - 1049344..1049913 (-) 570 WP_243976427.1 PilZ domain-containing protein -
  MTP21_RS04845 lolC 1050165..1051373 (+) 1209 WP_065296581.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  MTP21_RS04850 lolD 1051366..1052073 (+) 708 WP_014231284.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  MTP21_RS04855 lolE 1052076..1053320 (+) 1245 WP_243976429.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  MTP21_RS04860 - 1053473..1053982 (-) 510 WP_014231286.1 DUF2062 domain-containing protein -
  MTP21_RS04865 comEC 1053991..1056249 (+) 2259 WP_243976431.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MTP21_RS04870 msbA 1056281..1058029 (+) 1749 WP_014231288.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  MTP21_RS04875 lpxK 1058033..1059040 (+) 1008 WP_243976434.1 tetraacyldisaccharide 4'-kinase -
  MTP21_RS04880 - 1059021..1059200 (+) 180 WP_014231290.1 Trm112 family protein -
  MTP21_RS04885 kdsB 1059200..1059958 (+) 759 WP_065299375.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84426.40 Da        Isoelectric Point: 8.5476

>NTDB_id=673879 MTP21_RS04865 WP_243976431.1 1053991..1056249(+) (comEC) [Vibrio natriegens strain WPAGA4]
MTLSEKSCTLALFVASIVSSAWWPIMPDWRWLLLGIITTGSIIKLRRGLISIGVILGLMVVIIHGNVLEYQRQALFNVGE
NSTITGKVDSSFNQISHGYEGLVTIKQVGDQSLLPFLKPKVRFITTFPIPVNSEFTTTAQVKPIIGLRNEAGFDAEKQAM
GNGILARMIVTGDAHWIIRNGRSVRQSIINLVMDDISHLDHFPLISALVFADRSWLSGDDWQGLRDSGLLHLASISGLHI
GMAFSFGFLLGVSVRSVIPRYQVVPSITGLTVALCYAWLADFSLPTTRAVSVCVIYIVLKYFLVHWSTWRVLLLAVAFQL
LIQPFASFSMSFWLSYLSVGMVLLVINFVRFNNSSWRGKLRTLFVTQLALSVFVIPISGYFFSGFSLSSIAYNLVFIPWF
GFVVVPLMFIALSTSLLLPAFSPIVWQLMDFSLWPLSESLQYAFGTWQPLSIELTWILFSLCTFLVLKRLLLWQGWLLLC
VITIIVSGLNGRKSTSWRIDVLDVGHGLAVLVEKEGKALIYDTGKSWPEGSVAEQVIIPVLHRRGFREVDTLVLSHSDND
HAGGRQVIETHLKPSHKRSSQDFSGYQPCVSGDNWTWQQLDIEVLWPPQMVTRAYNPHSCVFRLRDRESDFSMLFTGDIE
SISEWILLREPEKLSSDVMLVPHHGSKSSSNPLFIHAVSPTLAVASLAKNNQWGMPADKVVTSYLNAGALWLDTGEGGQV
TIRVTKDKWDFVTKRSDTFEPWYRQMLRKGLE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=673879 MTP21_RS04865 WP_243976431.1 1053991..1056249(+) (comEC) [Vibrio natriegens strain WPAGA4]
ATGACTCTCTCAGAAAAAAGTTGCACCTTGGCGTTATTTGTCGCGAGCATTGTCTCATCGGCATGGTGGCCGATAATGCC
AGATTGGCGCTGGCTGCTGCTGGGAATAATTACCACTGGTTCAATAATTAAATTACGTCGTGGCTTAATTAGCATAGGCG
TAATTTTGGGCTTAATGGTAGTCATCATCCACGGCAATGTATTGGAGTATCAGCGACAAGCCCTTTTTAATGTAGGGGAG
AATAGTACCATAACTGGCAAAGTTGACAGCTCTTTTAATCAAATAAGTCATGGATATGAAGGACTCGTGACGATAAAACA
AGTGGGTGATCAAAGTCTGTTACCTTTTCTTAAACCTAAAGTCCGTTTTATCACCACCTTTCCTATCCCTGTTAACAGTG
AATTTACGACCACGGCTCAGGTAAAGCCCATTATTGGGTTGCGCAACGAAGCGGGTTTCGACGCTGAAAAGCAGGCAATG
GGAAATGGTATTTTAGCCAGAATGATTGTGACTGGCGATGCGCACTGGATTATTCGTAACGGACGTTCTGTACGTCAGTC
GATAATCAACCTGGTAATGGATGATATCTCCCATCTAGACCACTTTCCGTTAATCAGTGCTCTGGTATTTGCTGATAGAA
GCTGGCTTTCTGGTGATGACTGGCAAGGGCTGAGAGACAGTGGATTATTGCACCTGGCCTCTATCTCCGGGCTGCACATT
GGAATGGCTTTTAGCTTTGGTTTTTTGCTCGGTGTAAGTGTTCGCTCCGTTATCCCGCGTTATCAAGTGGTGCCTTCAAT
CACGGGGTTAACCGTCGCGCTGTGTTATGCCTGGCTCGCTGATTTTTCTCTGCCAACCACTCGCGCCGTATCGGTTTGTG
TCATCTACATTGTTCTAAAATACTTTTTGGTTCACTGGAGTACCTGGCGAGTGTTGCTCCTGGCGGTTGCTTTTCAGTTA
CTTATTCAGCCTTTCGCATCTTTTAGTATGAGTTTCTGGTTGTCTTATCTCTCTGTGGGTATGGTTCTGTTGGTCATTAA
CTTTGTGCGGTTCAATAACAGTAGCTGGCGAGGAAAACTGCGAACCTTGTTTGTGACTCAACTTGCCTTGAGTGTATTTG
TCATACCTATCAGTGGCTATTTTTTCTCTGGTTTCAGCTTATCGTCCATCGCTTATAACCTTGTGTTTATCCCATGGTTT
GGGTTTGTCGTCGTTCCTTTAATGTTTATCGCGTTATCTACTTCTCTATTACTACCCGCATTCTCGCCAATAGTTTGGCA
ATTGATGGATTTCTCTTTATGGCCGTTAAGTGAATCTCTTCAGTATGCCTTTGGTACGTGGCAACCATTGTCGATAGAAC
TTACGTGGATACTGTTTTCTCTCTGTACTTTCTTGGTTTTGAAGCGGTTATTGCTTTGGCAGGGTTGGCTATTGCTGTGC
GTTATTACCATCATCGTTTCAGGTCTAAATGGACGAAAAAGTACCAGTTGGCGAATCGATGTTCTCGATGTCGGTCATGG
TCTTGCCGTTCTGGTAGAAAAAGAGGGTAAAGCTCTGATTTACGATACTGGAAAATCCTGGCCGGAGGGCAGTGTTGCGG
AGCAGGTGATTATACCCGTGTTGCATCGCAGAGGATTTAGAGAGGTTGATACCTTGGTTCTCAGTCATTCAGACAATGAC
CACGCAGGAGGAAGGCAAGTGATTGAAACGCACCTCAAGCCGAGCCATAAACGCAGCAGCCAAGATTTTAGTGGGTATCA
ACCTTGTGTGAGCGGTGATAATTGGACGTGGCAGCAACTCGATATCGAAGTGCTCTGGCCACCCCAAATGGTCACTCGAG
CCTACAACCCTCACTCGTGTGTCTTTAGACTCAGAGACCGAGAATCTGATTTTTCCATGCTGTTCACGGGTGATATTGAG
TCGATTAGTGAGTGGATACTTCTTCGTGAGCCTGAAAAATTATCTAGTGATGTGATGCTCGTTCCTCATCACGGTAGCAA
AAGTTCCTCCAATCCTCTTTTTATCCATGCAGTCTCTCCAACATTAGCGGTAGCATCACTGGCGAAAAACAATCAGTGGG
GAATGCCTGCTGATAAGGTAGTGACTTCGTATCTCAACGCAGGGGCGCTATGGCTTGATACTGGTGAGGGTGGACAAGTT
ACTATCCGAGTAACGAAAGATAAGTGGGATTTTGTAACCAAACGCAGTGATACATTTGAGCCTTGGTATAGGCAGATGCT
GCGTAAGGGGTTAGAATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-681)

Competence protein (Competence)

(208-474)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

66.622

100

0.666
  comEC Vibrio campbellii strain DS40M4

63.697

100

0.637
  comEC Vibrio cholerae strain A1552

38.492

100

0.387