Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   MT343_RS17950 Genome accession   NZ_CP094879
Coordinates   3988855..3989592 (-) Length   245 a.a.
NCBI ID   WP_243989430.1    Uniprot ID   -
Organism   Thalassolituus sp. C2-1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 3983855..3994592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MT343_RS17920 selD 3984090..3985145 (-) 1056 WP_145467908.1 selenide, water dikinase SelD -
  MT343_RS17925 - 3985251..3985874 (+) 624 WP_145467906.1 hypothetical protein -
  MT343_RS17930 - 3985868..3986656 (-) 789 WP_145467904.1 ABC transporter substrate-binding protein -
  MT343_RS17935 - 3986810..3986977 (-) 168 WP_186435843.1 hypothetical protein -
  MT343_RS17940 - 3986974..3987762 (-) 789 WP_145467902.1 hypothetical protein -
  MT343_RS17945 - 3987771..3988631 (-) 861 WP_145467900.1 hypothetical protein -
  MT343_RS17950 ideA 3988855..3989592 (-) 738 WP_243989430.1 endonuclease Regulator
  MT343_RS17955 - 3989700..3990533 (-) 834 WP_222428506.1 hypothetical protein -
  MT343_RS17960 moaA 3991097..3992164 (+) 1068 WP_145467898.1 GTP 3',8-cyclase MoaA -
  MT343_RS17965 - 3992165..3992779 (+) 615 WP_145467897.1 molybdenum cofactor guanylyltransferase -
  MT343_RS17970 moaB 3993116..3993655 (+) 540 WP_145467895.1 molybdenum cofactor biosynthesis protein B -
  MT343_RS17975 moaC 3993707..3994192 (+) 486 WP_145467893.1 cyclic pyranopterin monophosphate synthase MoaC -
  MT343_RS17980 - 3994202..3994450 (+) 249 WP_145467891.1 MoaD/ThiS family protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28200.88 Da        Isoelectric Point: 8.9823

>NTDB_id=673862 MT343_RS17950 WP_243989430.1 3988855..3989592(-) (ideA) [Thalassolituus sp. C2-1]
MIMRFTVRQCAVALLLFCCLPLQAEQASQADDRQSGPQSFREAKRMAAKLYASLPGGQRTFYCDCAFSGKDIDASACGYS
ARKNAKRGARLEWEHVVPAWEFGHQLQCWQNGGRKNCSKNDAQFRRMEADLHNLVPAVGELNGDRSNFRFGMLEGEPRVY
GRCDFEVDFKLRRAEPKDDRRGDVARIYFYMRDRYGLKISRQQTQLFNAWHKLDAVDDAERERDRRVSALQGNGNCYVRS
CDNKK

Nucleotide


Download         Length: 738 bp        

>NTDB_id=673862 MT343_RS17950 WP_243989430.1 3988855..3989592(-) (ideA) [Thalassolituus sp. C2-1]
ATGATCATGCGTTTTACTGTCAGGCAGTGTGCGGTTGCCCTGCTGTTATTCTGTTGTTTACCTCTGCAGGCAGAGCAGGC
CAGTCAGGCCGATGACCGCCAGTCCGGTCCGCAATCCTTCCGTGAAGCCAAGCGTATGGCGGCTAAGCTGTACGCCAGTC
TGCCGGGTGGCCAGCGCACCTTTTATTGTGACTGTGCTTTCTCCGGCAAAGATATTGATGCTTCGGCCTGTGGTTACAGT
GCGCGTAAAAATGCCAAACGCGGTGCGCGGCTGGAATGGGAACATGTGGTTCCTGCCTGGGAGTTTGGCCATCAGTTGCA
GTGCTGGCAGAACGGTGGCCGCAAGAACTGCAGTAAAAACGATGCGCAATTCCGCCGTATGGAAGCCGACCTGCACAATC
TTGTGCCTGCTGTTGGCGAGTTAAACGGCGACCGTTCCAACTTCCGTTTCGGTATGCTCGAAGGGGAGCCGCGTGTCTAT
GGCCGCTGTGATTTTGAAGTGGATTTCAAACTGCGCCGTGCCGAGCCGAAAGACGACCGCCGCGGTGATGTGGCGCGGAT
TTATTTCTATATGCGTGACCGCTATGGCCTGAAAATCAGCCGCCAGCAAACTCAGCTGTTTAATGCCTGGCATAAGCTGG
ATGCAGTGGATGATGCCGAACGTGAGCGTGACCGCAGGGTCAGCGCGTTGCAGGGGAATGGTAATTGTTATGTGCGCAGT
TGTGATAATAAAAAGTAA

Domains

Predicted by InterproScan.

Endonuclease I (Endonuclease_1)

(65-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

64.532

82.857

0.535
  dns Vibrio parahaemolyticus RIMD 2210633

57.212

84.898

0.486
  dns Vibrio cholerae strain A1552

46.8

100

0.478
  dns Aliivibrio fischeri ES114

53.846

84.898

0.457