Detailed information NTG0673846

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: MT343_RS04305
• Genome accession: NZ_CP094879
• Coordinates: 954184..955527 (-)
• Length: 447 a.a.
• NCBI ID: WP_145469709.1
• Uniprot ID: -
• Organism: Thalassolituus sp. C2-1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 949184..960527

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MT343_RS04285	-	949382..952372 (-)	2991	WP_145469713.1	pilus assembly protein	-
MT343_RS04290	-	952374..952766 (-)	393	WP_145469712.1	hypothetical protein	-
MT343_RS04295	-	952780..953340 (-)	561	WP_145469711.1	PilX N-terminal domain-containing pilus assembly protein	-
MT343_RS04300	-	953450..954013 (-)	564	WP_145469710.1	GspH/FimT family protein	-
MT343_RS04305	pilR	954184..955527 (-)	1344	WP_145469709.1	sigma-54 dependent transcriptional regulator	Regulator
MT343_RS04310	-	955559..957085 (-)	1527	WP_145469708.1	PAS domain-containing sensor histidine kinase	-
MT343_RS04315	-	957201..958823 (+)	1623	WP_145469707.1	NAD+ synthase	-
MT343_RS04320	-	958883..959704 (-)	822	WP_145469706.1	outer membrane protein assembly factor BamD	-

Sequence

Protein

• Length: 447 a.a.
• Molecular weight: 49812.30 Da
• Isoelectric Point: 5.3966

>NTDB_id=673846 MT343_RS04305 WP_145469709.1 954184..955527(-) (pilR) [Thalassolituus sp. C2-1]
MNKFAALIIDDEPDIRALIALTLKRMELDCYQAGSVSEALTLLQERPYHFCITDMKLPDGNGLDLIQLCNTRHPDMPVAM
ITAYGNMELAVNALKAGAFDVVAKPLDTDRLRELVKAALQLTKVPANIENLPSADGLLGQSDGMRTLKEKIFKVARTQAP
VFIFGESGTGKELVARLIHHQSARMEQPFIAVNCGAIPRDLMESEFFGHAKGSFTGASSEKAGFFRAANGGTLFLDEVAE
LPLDMQAKLLRVIQEKAVRSVGSEFETPVDVRILCASHKDLGALVKAEEFRQDLYFRLNVIQINVPRLADRAEDIPMLIR
HFIRKYSQEWGMPEIMLEDSAQQALLAYHYPGNVRELENILQRAVTLAEGDSIGLSDLSLSKPISEEPDSSNPRIETNNL
EAYLENIERRAITQALEATRWNKTAAAEKLGISFRALRYRCKKLEID

Nucleotide

• Length: 1344 bp

>NTDB_id=673846 MT343_RS04305 WP_145469709.1 954184..955527(-) (pilR) [Thalassolituus sp. C2-1]
ATGAATAAATTTGCCGCCCTGATTATTGACGACGAACCCGACATCCGCGCTCTGATTGCACTGACGCTGAAGCGTATGGA
ACTGGATTGTTATCAGGCAGGAAGTGTCAGCGAAGCACTGACGTTATTGCAGGAACGTCCTTACCATTTCTGCATCACGG
ATATGAAATTACCGGATGGTAACGGCCTGGATCTGATTCAGCTGTGTAACACCCGCCATCCGGACATGCCGGTCGCCATG
ATCACCGCTTACGGCAATATGGAACTCGCCGTCAACGCGCTGAAAGCCGGCGCCTTCGATGTGGTGGCCAAACCACTGGA
TACCGACCGCCTGCGTGAACTGGTCAAAGCTGCCCTGCAGCTGACCAAGGTGCCGGCCAATATTGAAAACCTGCCTTCTG
CCGACGGCCTGCTTGGCCAGTCAGACGGCATGCGCACGCTGAAAGAAAAAATATTCAAAGTGGCCCGCACCCAGGCACCG
GTATTTATATTCGGTGAGTCCGGCACCGGCAAAGAACTGGTAGCACGTTTGATTCATCACCAAAGCGCCCGCATGGAGCA
GCCCTTTATCGCCGTTAATTGCGGCGCTATCCCGCGTGATTTAATGGAGAGCGAATTCTTCGGTCACGCCAAAGGCAGTT
TTACCGGCGCCAGCAGCGAAAAGGCCGGTTTTTTCCGCGCAGCCAATGGCGGCACCCTGTTCCTTGATGAAGTCGCCGAA
CTGCCACTTGATATGCAGGCCAAACTGCTGCGCGTAATTCAGGAAAAAGCGGTGCGCAGCGTTGGTTCCGAATTTGAAAC
ACCGGTCGATGTGCGCATACTCTGCGCCAGTCACAAAGACCTCGGAGCACTGGTCAAAGCCGAAGAGTTCCGTCAGGACT
TATATTTCCGCCTTAACGTGATTCAGATTAACGTACCGCGTCTGGCCGACCGGGCAGAAGATATTCCAATGCTGATCCGG
CATTTCATCCGTAAATATTCTCAGGAATGGGGCATGCCGGAGATTATGCTGGAAGATAGCGCACAGCAGGCACTGCTGGC
CTACCACTATCCGGGGAACGTACGTGAGCTGGAGAATATCCTGCAGCGTGCCGTCACCCTTGCCGAAGGTGACAGCATCG
GCCTCAGCGACCTGAGCCTGAGCAAACCGATCAGCGAAGAACCGGACAGCAGCAATCCGCGTATTGAAACCAACAACCTC
GAAGCCTACCTCGAGAACATTGAGCGCCGCGCCATCACCCAGGCGCTGGAAGCCACGCGCTGGAACAAAACCGCCGCCGC
CGAAAAGCTCGGCATCAGCTTCCGCGCGCTGCGTTACCGCTGTAAAAAACTCGAGATAGATTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (404-444)

• Sigma-54 interaction domain (Sigma54_activat) (137-303)

• Response regulator receiver domain (Response_reg) (7-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	58.613	100	0.586
pilR	Acinetobacter baumannii strain A118	48.035	100	0.492
luxO	Vibrio cholerae strain A1552	37.757	97.763	0.369