Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   OHB06_RS14005 Genome accession   NZ_CP109312
Coordinates   3088370..3090499 (-) Length   709 a.a.
NCBI ID   WP_266441379.1    Uniprot ID   A0ABP7SIR2
Organism   Streptomyces sp. NBC_01604     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3083370..3095499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB06_RS13990 (OHB06_14020) - 3084152..3085153 (-) 1002 WP_266441388.1 TerC/Alx family metal homeostasis membrane protein -
  OHB06_RS13995 (OHB06_14025) - 3085379..3087571 (-) 2193 WP_266441385.1 TerD family protein -
  OHB06_RS14000 (OHB06_14030) - 3087621..3088187 (-) 567 WP_266448652.1 TerD family protein -
  OHB06_RS14005 (OHB06_14035) uvrB 3088370..3090499 (-) 2130 WP_266441379.1 excinuclease ABC subunit UvrB Machinery gene
  OHB06_RS14010 (OHB06_14040) - 3090584..3091453 (-) 870 WP_266441375.1 MHYT domain-containing protein -
  OHB06_RS14015 (OHB06_14045) - 3091734..3092609 (+) 876 WP_266441372.1 glycerophosphodiester phosphodiesterase family protein -
  OHB06_RS14020 (OHB06_14050) - 3092687..3093241 (+) 555 WP_266441369.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  OHB06_RS14025 (OHB06_14055) fdhA 3093375..3094601 (+) 1227 WP_266441367.1 formaldehyde dehydrogenase, glutathione-independent -
  OHB06_RS14030 (OHB06_14060) - 3094654..3095082 (-) 429 WP_266441364.1 VOC family protein -

Sequence

Protein


Download         Length: 709 a.a.        Molecular weight: 79898.78 Da        Isoelectric Point: 4.8704

>NTDB_id=673828 OHB06_RS14005 WP_266441379.1 3088370..3090499(-) (uvrB) [Streptomyces sp. NBC_01604]
MRPVSHIERTVAPFEVVSPYQPSGDQPAAIAELARRIEAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSVNEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLKVGEEIDRDQLLRRFVDIQYTRNDMAFSRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EIISDDEQLYVFPASHYIAGPERLERAVNDIEKELGERLAELEKQGKLLEAQRLRMRTTYDLEMLRQIGSCSGVENYSMH
FDGREPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGDAARKRTLVDHGFRLPSALDNRPLKWEEFQKRIGQTVYL
SATPGKYELSRGDGAVEQIIRPTGLIDPEVIVKPTEGQIDDLVHEIRKRTEKDERVLVTTLTKKMSEDLTDYFLELGIQV
RYLHSDVDTLRRVELLRELRSGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPAMEKAIEETNRRREKQVAYNTERGIDPQPLRKKINDIVAQIAREDVDTEQLLGSGYRKLKEGKGAKAPVPALGS
KAAKAAKGKAKETVPTDRPAAELAEQIEEMTERMRAAAADLQFEIAARLRDEVSEMKKELRQMKEAGLA

Nucleotide


Download         Length: 2130 bp        

>NTDB_id=673828 OHB06_RS14005 WP_266441379.1 3088370..3090499(-) (uvrB) [Streptomyces sp. NBC_01604]
ATGCGGCCCGTTTCCCACATCGAACGCACGGTGGCGCCCTTCGAGGTCGTCAGCCCGTACCAGCCCAGCGGCGACCAGCC
CGCGGCCATCGCCGAGCTCGCCCGGCGCATCGAGGCCGGTGAGAAGGACGTCGTTCTGCTCGGCGCGACCGGCACCGGCA
AGTCCGCCACCACCGCGTGGATGATCGAGAAGCTCCAGCGTCCCACCCTCGTGATGGCGCCGAACAAGACGCTGGCCGCC
CAGCTGGCCAACGAGTTCCGGGAGCTGCTGCCGAACAACGCCGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCGGTCAACGAGGAGGTCGAGCGGCTGCGCCACT
CCGCGACCAACTCGCTCCTCACCCGCCGCGACGTCGTCGTGGTCGCCTCGGTCTCCTGCATCTACGGCCTCGGTACTCCG
CAGGAGTACGTGGACCGCATGGTCCCCCTCAAGGTCGGCGAGGAGATCGACCGCGACCAGCTGCTGCGCCGCTTCGTGGA
CATCCAGTACACGCGCAACGACATGGCGTTCAGCCGCGGCACCTTCCGCGTCCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTCGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCCCTGTCCACCCTCCACCCGCTCACCGGC
GAGATCATCAGCGACGACGAGCAGCTGTACGTCTTCCCGGCCTCCCACTACATCGCGGGCCCCGAGCGCCTGGAGCGGGC
CGTCAACGACATCGAGAAGGAGCTCGGCGAGCGCCTGGCCGAGCTGGAGAAGCAGGGCAAGCTCCTGGAGGCCCAGCGGC
TGCGCATGCGCACGACGTACGACCTCGAGATGCTCCGCCAGATCGGCTCCTGCTCCGGAGTCGAGAACTACTCGATGCAC
TTCGACGGCCGCGAGCCCGGCTCCCCGCCGAACACCCTGCTGGACTACTTCCCGGACGACTTCCTGCTCGTCATCGACGA
GTCCCATGTCACCGTCCCGCAGATCGGCGCCATGTACGAGGGCGACGCCGCTCGCAAGCGCACCCTCGTCGACCACGGCT
TCCGGCTGCCCTCCGCGCTGGACAACCGCCCGCTGAAGTGGGAGGAGTTCCAAAAGCGCATCGGCCAGACCGTCTACCTG
TCCGCGACCCCGGGCAAGTACGAGCTCTCGCGCGGTGACGGCGCCGTCGAACAGATCATCCGCCCCACCGGTCTGATCGA
CCCCGAGGTCATCGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTGCACGAGATTCGCAAGCGCACCGAGAAGGACG
AGCGCGTCCTGGTCACCACCCTCACGAAGAAGATGTCCGAGGACCTCACCGACTACTTCCTGGAGCTCGGCATCCAGGTG
CGCTACCTGCACAGCGACGTCGACACCCTGCGCCGGGTCGAACTGCTGCGCGAGCTGCGGTCCGGCGAGTTCGACGTCCT
GGTCGGCATCAACCTCCTCCGCGAGGGCCTCGACCTGCCCGAGGTGTCCCTGGTGGCGATCCTCGACGCCGACAAGGAGG
GCTTCCTGCGCTCGGGCACCTCCCTCATCCAGACCATCGGCCGCGCGGCGCGCAATGTCTCCGGCCAGGTCCACATGTAC
GCCGACAAGATCACCCCGGCGATGGAGAAGGCCATCGAGGAGACCAACCGCCGCCGGGAGAAGCAGGTCGCGTACAACAC
GGAGCGGGGCATCGATCCCCAGCCGCTCCGCAAGAAGATCAACGACATCGTCGCGCAGATCGCCCGCGAGGACGTCGACA
CCGAGCAGCTGCTCGGTTCCGGCTACCGCAAGCTGAAGGAGGGCAAGGGTGCCAAGGCTCCCGTGCCCGCTCTGGGAAGC
AAGGCGGCCAAGGCCGCCAAGGGCAAGGCCAAGGAGACGGTGCCGACCGACCGTCCCGCGGCCGAGCTCGCCGAGCAGAT
CGAGGAGATGACCGAGCGGATGCGCGCAGCCGCCGCCGACCTCCAGTTCGAGATCGCCGCCCGACTGCGCGACGAGGTCT
CCGAAATGAAGAAGGAACTCCGCCAGATGAAGGAGGCCGGCCTGGCCTGA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-128)

Ultra-violet resistance protein B (UvrB)

(559-600)

Helicase conserved C-terminal domain (Helicase_C)

(440-551)

UvrB interaction domain (UvrB_inter)

(169-257)

UvrB/uvrC motif (UVR)

(665-698)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.122

98.025

0.56
  uvrB Streptococcus pneumoniae R6

57.122

98.025

0.56
  uvrB Streptococcus pneumoniae D39

57.122

98.025

0.56