Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   OH775_RS13365 Genome accession   NZ_CP109301
Coordinates   2921677..2922324 (-) Length   215 a.a.
NCBI ID   WP_406472502.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01615     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2916677..2927324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH775_RS13355 (OH775_13340) - 2917386..2919929 (-) 2544 WP_406472500.1 polynucleotide kinase-phosphatase -
  OH775_RS13360 (OH775_13345) - 2919926..2921401 (-) 1476 WP_406472501.1 3' terminal RNA ribose 2'-O-methyltransferase Hen1 -
  OH775_RS13365 (OH775_13350) letA 2921677..2922324 (-) 648 WP_406472502.1 response regulator Regulator
  OH775_RS13370 (OH775_13355) - 2922321..2923625 (-) 1305 WP_406472503.1 sensor histidine kinase -
  OH775_RS13375 (OH775_13360) - 2923750..2924907 (-) 1158 WP_406472504.1 ABC transporter substrate-binding protein -
  OH775_RS13380 (OH775_13365) - 2925154..2926077 (+) 924 WP_406472505.1 LLM class F420-dependent oxidoreductase -
  OH775_RS13385 (OH775_13370) - 2926321..2926485 (+) 165 WP_406472506.1 hypothetical protein -
  OH775_RS13390 (OH775_13375) - 2926722..2927201 (-) 480 WP_327432413.1 DUF6099 family protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 22877.39 Da        Isoelectric Point: 6.1308

>NTDB_id=673516 OH775_RS13365 WP_406472502.1 2921677..2922324(-) (letA) [Streptomyces sp. NBC_01615]
MTAEPLRVLIADDHAVVRAGLRALLEGEPDLDVVAEAHSGEQAVRLTAQLTPDVALMDLRFAGPGDGIDGVEATRRLAAR
APRVAVVILTSYAGRADVVRALEAGARGYVLKAGPPEELFRAVRIAAAGSMGLAPEIVGELVGQVVSPRHDLSDREIEVV
RLMAEGLSNRAIAEALFLSEATIKTHLVRVYRKLKVDNRAAAVSEAVRRGVLELT

Nucleotide


Download         Length: 648 bp        

>NTDB_id=673516 OH775_RS13365 WP_406472502.1 2921677..2922324(-) (letA) [Streptomyces sp. NBC_01615]
ATGACCGCCGAACCGCTTCGCGTCCTGATCGCGGACGACCACGCCGTCGTACGGGCCGGACTGCGCGCCCTCCTGGAGGG
CGAACCCGACCTCGATGTGGTCGCCGAGGCGCACAGCGGTGAGCAAGCCGTCCGCCTGACCGCCCAGTTGACGCCGGACG
TCGCGCTGATGGATCTGCGGTTCGCCGGCCCGGGCGACGGCATCGACGGCGTCGAGGCGACCCGCCGGCTCGCCGCCAGG
GCCCCGCGCGTGGCCGTGGTGATACTGACCAGCTATGCCGGACGGGCCGACGTCGTCCGCGCGTTGGAGGCGGGCGCCCG
CGGCTACGTACTCAAGGCGGGACCGCCCGAGGAACTCTTCCGGGCGGTCCGCATCGCCGCCGCCGGTTCCATGGGGCTCG
CCCCGGAGATCGTCGGTGAACTCGTCGGCCAGGTGGTCAGCCCGCGGCACGACTTGAGCGACCGCGAGATCGAGGTCGTC
CGGCTGATGGCCGAGGGCCTCAGCAACCGCGCCATCGCCGAGGCCCTGTTCCTCAGCGAGGCCACGATCAAGACCCATCT
CGTCCGCGTCTACCGCAAACTCAAGGTCGACAACCGGGCGGCGGCGGTGTCGGAGGCCGTCCGCCGAGGCGTCCTAGAAC
TCACCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-123)

Bacterial regulatory proteins, luxR family (GerE)

(152-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.028

99.07

0.377
  letA Legionella pneumophila strain ERS1305867

38.028

99.07

0.377
  degU Bacillus subtilis subsp. subtilis str. 168

34.498

100

0.367