Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   MUG10_RS15695 Genome accession   NZ_CP094827
Coordinates   3536583..3538037 (-) Length   484 a.a.
NCBI ID   WP_286365574.1    Uniprot ID   -
Organism   Xanthomonas prunicola strain Arg-1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3531583..3543037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUG10_RS15680 (MUG10_15685) - 3532015..3532644 (+) 630 WP_252165100.1 hypothetical protein -
  MUG10_RS15685 (MUG10_15690) - 3532614..3534140 (+) 1527 WP_313905434.1 hypothetical protein -
  MUG10_RS15690 (MUG10_15695) pilB 3534175..3535911 (+) 1737 WP_252162276.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MUG10_RS15695 (MUG10_15700) pilR 3536583..3538037 (-) 1455 WP_286365574.1 sigma-54 dependent transcriptional regulator Regulator
  MUG10_RS15700 (MUG10_15705) - 3538308..3539920 (-) 1613 Protein_3057 HAMP domain-containing sensor histidine kinase -
  MUG10_RS15705 (MUG10_15710) sucC 3540153..3541322 (+) 1170 WP_101361865.1 ADP-forming succinate--CoA ligase subunit beta -
  MUG10_RS15710 (MUG10_15715) sucD 3541347..3542222 (+) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  MUG10_RS15715 (MUG10_15720) - 3542628..3542999 (+) 372 WP_252162277.1 DUF559 domain-containing protein -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52440.17 Da        Isoelectric Point: 6.9343

>NTDB_id=673508 MUG10_RS15695 WP_286365574.1 3536583..3538037(-) (pilR) [Xanthomonas prunicola strain Arg-1]
MSRNPVDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPAPPPEQASR
LLGDSGAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHGHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAATPGSAAVEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=673508 MUG10_RS15695 WP_286365574.1 3536583..3538037(-) (pilR) [Xanthomonas prunicola strain Arg-1]
GTGAGCCGCAACCCGGTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGGCTGCGCATCAGCACCG
CTGCCAACCTGGCCGAAGCCCGCGAATTGCTGGCGAACAATCCCTACGATCTGTGCCTGACCGACATGCGCTTGCCCGAC
GGCAATGGCATCGAACTGGTCACCGAAATCGCCAGACAGTACCCGCAGACCCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCAGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGCCCCGCTCCGCCCGCGCCACCACCGGAACAGGCCAGCCGC
CTGCTCGGCGACTCCGGCGCCATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGCAGCCAGGCGCCGGTTTACAT
CGTCGGTGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAGCAAGGCGCACGTGCCGCCGGCCCGTTCG
TGCCGGTCAACTGCGGCGCCATTCCGGCCGAATTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGGCTATTCCAGGCCGCCCACGGCGGCACGTTGTTCCTGGACGAAGTGGCCGAATTGCCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGCCCGGTTGGCGCCTCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTGATCGAACTGCGCGTGCCACCGCTGCGCGAACGCGGCGGCGACTTGCCGCAACTGGCCGCTGCCATCAT
CGCGCGCCTGGCGCACGGTCACGGCCGCCCCATTCCACTGCTGACCCAATCCGCGCTCGACGCATTGAATCACTACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTTGCCCTGGCCGAAGACGACCAGATCAGCGCCACC
GACCTGCGCCTGCCTGCCCACGGCGGGCACCGCCTCGCCGCCACGCCCGGCAGCGCCGCCGTCGAACCGCGCGAAGCCGT
GGTCGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAGCAACTGGAACGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGCATCACGTTTCGGGCGCTGCGTTACAAGCTCAAGAAG
TTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(28-134)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)

Sigma-54 interaction domain (Sigma54_activat)

(162-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.696

95.041

0.605
  pilR Acinetobacter baumannii strain A118

48.922

95.868

0.469