Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MUA52_RS07775 Genome accession   NZ_CP094814
Coordinates   1591084..1591965 (-) Length   293 a.a.
NCBI ID   WP_262617824.1    Uniprot ID   -
Organism   Staphylococcus agnetis strain IVB6175     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1586084..1596965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA52_RS07760 (MUA52_07760) xerC 1586592..1587482 (-) 891 WP_262617823.1 tyrosine recombinase XerC -
  MUA52_RS07765 (MUA52_07765) trmFO 1587603..1588907 (-) 1305 WP_105995826.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MUA52_RS07770 (MUA52_07770) topA 1588920..1590989 (-) 2070 WP_060550903.1 type I DNA topoisomerase -
  MUA52_RS07775 (MUA52_07775) dprA 1591084..1591965 (-) 882 WP_262617824.1 DNA-processing protein DprA Machinery gene
  MUA52_RS07780 (MUA52_07780) sucD 1592178..1593086 (-) 909 WP_037564699.1 succinate--CoA ligase subunit alpha -
  MUA52_RS07785 (MUA52_07785) sucC 1593108..1594274 (-) 1167 WP_262626865.1 ADP-forming succinate--CoA ligase subunit beta -
  MUA52_RS07790 (MUA52_07790) - 1594487..1594756 (-) 270 WP_037564707.1 hypothetical protein -
  MUA52_RS07795 (MUA52_07795) - 1594843..1595619 (-) 777 WP_262617825.1 ribonuclease HII -
  MUA52_RS07800 (MUA52_07800) ylqF 1595609..1596490 (-) 882 WP_060552473.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 33077.45 Da        Isoelectric Point: 9.5595

>NTDB_id=673145 MUA52_RS07775 WP_262617824.1 1591084..1591965(-) (dprA) [Staphylococcus agnetis strain IVB6175]
MLLENLIKLRYAGFTTQQLYRIFKRPIDVLSSDITPILHQYITNQSPSSLRLKLQTFHTLSASNILQQLRHDNIFPITLL
DEQFPTLLKEIYQPPLLLFCKGDLSYVTASKYKLSIVGARDCTLYSEKAVNYLLQEMKHAPLIIVSGLAKGTDALAHDYA
LKYSLPTIGVLGFGHHYHYPSVTKSLRHTIEMNGRGLTISEYPPMTPPAKFRFPERNRIISGLSHGVLVTEAKEKSGALI
TLDQALEHNRNVYVLPGDMFNKHTKGNMMRIKEGAEIVLSATDILKDLNTSIQ

Nucleotide


Download         Length: 882 bp        

>NTDB_id=673145 MUA52_RS07775 WP_262617824.1 1591084..1591965(-) (dprA) [Staphylococcus agnetis strain IVB6175]
GTGCTATTAGAAAATTTAATCAAATTGCGTTATGCAGGTTTTACGACACAGCAACTTTATCGCATTTTTAAGCGACCTAT
TGACGTTTTGTCATCAGACATCACACCTATTTTGCATCAATATATTACGAACCAAAGTCCTTCTTCGTTACGATTGAAAC
TCCAAACATTTCATACATTAAGTGCTTCTAATATTTTACAACAACTCCGTCACGATAACATTTTTCCAATCACTCTATTA
GATGAGCAATTCCCAACCCTTTTAAAAGAAATTTACCAACCGCCACTTTTATTATTTTGTAAAGGCGACCTCTCATACGT
TACCGCTTCAAAGTACAAACTCAGCATAGTGGGTGCACGTGACTGTACGCTTTATAGCGAAAAAGCTGTCAATTATCTTC
TTCAAGAGATGAAACATGCGCCTTTAATCATTGTATCTGGTCTTGCGAAAGGAACAGATGCACTTGCGCATGATTACGCG
CTCAAATATTCATTACCTACAATAGGTGTGTTAGGGTTTGGGCATCATTATCATTATCCTTCAGTAACAAAATCACTTCG
ACACACAATTGAAATGAACGGACGAGGATTAACTATCAGTGAATATCCTCCCATGACGCCACCCGCAAAATTCCGTTTTC
CTGAACGTAATCGTATAATCAGTGGTCTGAGCCATGGCGTTCTAGTTACAGAAGCAAAAGAGAAAAGTGGTGCACTTATC
ACGTTAGATCAAGCATTAGAACATAATCGAAATGTGTATGTACTCCCTGGAGATATGTTTAATAAACACACAAAAGGTAA
TATGATGCGTATTAAGGAAGGTGCTGAAATTGTACTTTCAGCAACAGATATTTTGAAAGATTTGAATACGTCAATTCAGT
GA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(70-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50.877

97.27

0.495
  dprA Staphylococcus aureus N315

50.877

97.27

0.495
  dprA Streptococcus mutans UA159

36.486

100

0.369