Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   MUA97_RS04460 Genome accession   NZ_CP094811
Coordinates   936697..937326 (+) Length   209 a.a.
NCBI ID   WP_262608803.1    Uniprot ID   -
Organism   Staphylococcus agnetis strain IVB6187     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 931697..942326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA97_RS04430 (MUA97_04420) - 932013..933044 (-) 1032 WP_060551432.1 aromatic acid exporter family protein -
  MUA97_RS04435 (MUA97_04425) - 933164..933481 (-) 318 WP_246864159.1 YkvA family protein -
  MUA97_RS04440 (MUA97_04430) map 933710..934468 (+) 759 WP_060551430.1 type I methionyl aminopeptidase -
  MUA97_RS04445 (MUA97_04435) - 934567..934953 (+) 387 WP_262608802.1 hypothetical protein -
  MUA97_RS04450 (MUA97_04440) liaF 934966..935667 (+) 702 WP_060551429.1 cell wall-active antibiotics response protein LiaF -
  MUA97_RS04455 (MUA97_04445) vraS 935664..936707 (+) 1044 WP_037566929.1 sensor histidine kinase Regulator
  MUA97_RS04460 (MUA97_04450) vraR 936697..937326 (+) 630 WP_262608803.1 response regulator transcription factor Regulator
  MUA97_RS04465 (MUA97_04455) - 937392..937961 (-) 570 WP_037566924.1 carbonic anhydrase -
  MUA97_RS04470 (MUA97_04460) - 937997..939268 (-) 1272 WP_060551427.1 YihY/virulence factor BrkB family protein -
  MUA97_RS04475 (MUA97_04465) - 939384..939659 (-) 276 WP_037566921.1 hypothetical protein -
  MUA97_RS04480 (MUA97_04470) - 939667..940125 (-) 459 WP_060551426.1 low molecular weight protein-tyrosine-phosphatase -
  MUA97_RS04485 (MUA97_04475) - 940258..940467 (+) 210 WP_060551425.1 DUF1128 domain-containing protein -
  MUA97_RS04490 (MUA97_04480) - 940484..941719 (+) 1236 WP_262608804.1 aminopeptidase -
  MUA97_RS04495 (MUA97_04485) - 941732..942250 (+) 519 WP_060551423.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23600.32 Da        Isoelectric Point: 5.3841

>NTDB_id=673038 MUA97_RS04460 WP_262608803.1 936697..937326(+) (vraR) [Staphylococcus agnetis strain IVB6187]
MTIKVLFVDDHEMVRIGISSYLSTQPDIEVVGEGASGKEAISKAHELKPDLILMDLVMTDMDGVEATTHIKKELPRIKVV
MLTSYIEDKEVYRALDAGVDSYILKTTSAKDIAEAIRKTFQGESVFEAEVLVKMRNRMRQRAELYELLTEREMEILLLIS
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHGLIE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=673038 MUA97_RS04460 WP_262608803.1 936697..937326(+) (vraR) [Staphylococcus agnetis strain IVB6187]
ATGACAATTAAAGTATTATTTGTAGATGATCATGAAATGGTTAGAATTGGAATTTCGAGTTATCTTTCTACACAACCAGA
CATTGAAGTAGTAGGTGAAGGGGCGTCAGGTAAAGAGGCAATCTCAAAAGCACATGAACTGAAACCGGATTTAATTTTAA
TGGATTTAGTGATGACAGATATGGATGGGGTTGAGGCTACGACACATATTAAAAAAGAGTTACCACGTATCAAAGTGGTG
ATGCTTACAAGTTACATTGAGGATAAAGAAGTTTATCGCGCTTTAGATGCCGGTGTCGACAGCTATATTTTAAAAACAAC
AAGTGCAAAAGATATTGCCGAAGCTATTCGTAAAACATTCCAAGGTGAATCTGTTTTTGAAGCAGAAGTATTAGTGAAAA
TGCGAAATCGTATGCGACAAAGAGCTGAACTTTACGAATTGTTAACGGAACGTGAAATGGAAATTTTATTGCTGATTTCC
AAAGGGTATTCGAATCAAGAAATTGCGAGCGCTTCACATATTACGATTAAGACTGTAAAAACTCATGTGAGTAATATTTT
AAGTAAATTGGAAGTTCAGGACCGTACTCAGGCTGTGATATATGCCTTTCAACATGGGTTAATAGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

90.431

100

0.904
  degU Bacillus subtilis subsp. subtilis str. 168

35.268

100

0.378