Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MUA95_RS07515 Genome accession   NZ_CP094809
Coordinates   1564331..1565212 (-) Length   293 a.a.
NCBI ID   WP_262626153.1    Uniprot ID   -
Organism   Staphylococcus agnetis strain IVB6197     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1559331..1570212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA95_RS07500 (MUA95_07490) xerC 1559839..1560729 (-) 891 WP_262626152.1 tyrosine recombinase XerC -
  MUA95_RS07505 (MUA95_07495) trmFO 1560850..1562154 (-) 1305 WP_105995826.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MUA95_RS07510 (MUA95_07500) topA 1562167..1564236 (-) 2070 WP_060550903.1 type I DNA topoisomerase -
  MUA95_RS07515 (MUA95_07505) dprA 1564331..1565212 (-) 882 WP_262626153.1 DNA-processing protein DprA Machinery gene
  MUA95_RS07520 (MUA95_07510) sucD 1565425..1566333 (-) 909 WP_037564699.1 succinate--CoA ligase subunit alpha -
  MUA95_RS07525 (MUA95_07515) sucC 1566355..1567521 (-) 1167 WP_037564702.1 ADP-forming succinate--CoA ligase subunit beta -
  MUA95_RS07530 (MUA95_07520) - 1567734..1568003 (-) 270 WP_037564707.1 hypothetical protein -
  MUA95_RS07535 (MUA95_07525) - 1568090..1568866 (-) 777 WP_262626154.1 ribonuclease HII -
  MUA95_RS07540 (MUA95_07530) ylqF 1568856..1569737 (-) 882 WP_262626046.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 33081.44 Da        Isoelectric Point: 9.5595

>NTDB_id=673020 MUA95_RS07515 WP_262626153.1 1564331..1565212(-) (dprA) [Staphylococcus agnetis strain IVB6197]
MLLENLIKLRYAGFTTQQLYRIFKRPIDVLSSDITPILHQYITNQSPSSLRLKLQTFHTLSASNILQQLRHDNIFPITLL
DEQFPTLLKEIYQPPLLLFCKGDLSYVTASKYKLSIVGARDCTLYSEKAVNYLLQEMKHAPLIIVSGLAKGTDALAHDYA
LKYSLPTIGVLGFGHHYHYPSVTKSLRHTIEMNGRGLTISEYPTMTPPAKFRFPERNRIISGLSHGVLVTEAKEKSGALI
TLDQALEHNRNVYVLPGDMFNKHTKGNMMRIKEGAEIVLSATDILKDLNTSIQ

Nucleotide


Download         Length: 882 bp        

>NTDB_id=673020 MUA95_RS07515 WP_262626153.1 1564331..1565212(-) (dprA) [Staphylococcus agnetis strain IVB6197]
GTGCTATTAGAAAATTTAATCAAATTGCGTTATGCAGGTTTTACGACACAGCAACTTTATCGCATTTTTAAGCGACCTAT
TGACGTTTTGTCATCAGACATCACACCTATTTTGCATCAATATATTACGAACCAAAGTCCTTCTTCGTTACGATTGAAAC
TCCAAACATTTCATACATTAAGTGCTTCTAATATTTTACAACAACTCCGTCACGATAACATTTTTCCAATCACTCTATTA
GATGAGCAATTCCCAACCCTTTTAAAAGAAATTTACCAACCGCCACTTTTATTATTTTGTAAAGGCGACCTCTCATACGT
TACCGCTTCAAAGTACAAACTCAGCATAGTGGGTGCACGTGACTGTACGCTTTATAGCGAAAAAGCTGTCAATTATCTTC
TTCAAGAGATGAAACATGCGCCTTTAATCATTGTATCTGGTCTTGCGAAAGGAACAGATGCACTTGCGCATGATTACGCG
CTCAAATATTCATTACCTACAATAGGTGTGTTAGGGTTTGGGCATCATTATCATTATCCTTCAGTAACAAAATCACTTCG
ACACACAATTGAAATGAACGGACGAGGATTAACTATCAGTGAATATCCTACCATGACGCCACCCGCAAAATTCCGTTTTC
CTGAACGTAATCGTATAATCAGTGGTCTGAGCCATGGCGTTCTAGTTACAGAAGCAAAAGAGAAAAGTGGTGCACTTATC
ACGTTAGATCAAGCATTAGAACATAATCGAAATGTGTATGTACTCCCTGGAGATATGTTTAATAAACACACAAAAGGTAA
TATGATGCGTATTAAGGAAGGTGCTGAAATTGTACTTTCAGCAACAGATATTTTGAAAGATTTGAATACGTCAATTCAGT
GA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(70-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50.526

97.27

0.491
  dprA Staphylococcus aureus N315

50.526

97.27

0.491
  dprA Streptococcus mutans UA159

36.486

100

0.369