Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MUA11_RS07500 Genome accession   NZ_CP094808
Coordinates   1566827..1567708 (-) Length   293 a.a.
NCBI ID   WP_262625110.1    Uniprot ID   -
Organism   Staphylococcus agnetis strain IVB6212     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1561827..1572708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA11_RS07485 (MUA11_07475) xerC 1562335..1563225 (-) 891 WP_060550905.1 tyrosine recombinase XerC -
  MUA11_RS07490 (MUA11_07480) trmFO 1563346..1564650 (-) 1305 WP_105995826.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MUA11_RS07495 (MUA11_07485) topA 1564663..1566732 (-) 2070 WP_262625109.1 type I DNA topoisomerase -
  MUA11_RS07500 (MUA11_07490) dprA 1566827..1567708 (-) 882 WP_262625110.1 DNA-processing protein DprA Machinery gene
  MUA11_RS07505 (MUA11_07495) sucD 1567921..1568829 (-) 909 WP_037564699.1 succinate--CoA ligase subunit alpha -
  MUA11_RS07510 (MUA11_07500) sucC 1568851..1570017 (-) 1167 WP_037564702.1 ADP-forming succinate--CoA ligase subunit beta -
  MUA11_RS07515 (MUA11_07505) - 1570230..1570499 (-) 270 WP_037564707.1 hypothetical protein -
  MUA11_RS07520 (MUA11_07510) - 1570586..1571362 (-) 777 WP_262625111.1 ribonuclease HII -
  MUA11_RS07525 (MUA11_07515) ylqF 1571352..1572233 (-) 882 WP_262626046.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 33064.41 Da        Isoelectric Point: 9.4273

>NTDB_id=672989 MUA11_RS07500 WP_262625110.1 1566827..1567708(-) (dprA) [Staphylococcus agnetis strain IVB6212]
MLLENLIKLRYAGFTTQQLYRVFKRPIDVLSSDITPILHQYITNQSPSSLRLKLQTFHTLSASDILQQLRHDNIFPITLL
DEQFPTLLKEIYQPPLLLFCKGDLSYVTASKYKLSIVGARDCTLYSEKAVNYLLQEMKHAPLIIVSGLAKGTDALAHDYA
LKYSLPTIGVLGFGHHYHYPSVTKSLRHTIEMNGRGLTISEYPPMTPPAKFRFPERNRIISGLSHGVLVTEAKEKSGALI
TLDQALEHNRNVYVLPGDMFNKHTKGNMMRIKEGAEIVLSATDILKDLNTSIQ

Nucleotide


Download         Length: 882 bp        

>NTDB_id=672989 MUA11_RS07500 WP_262625110.1 1566827..1567708(-) (dprA) [Staphylococcus agnetis strain IVB6212]
GTGCTATTAGAAAATTTAATCAAATTGCGTTATGCAGGTTTTACGACACAGCAACTTTATCGCGTTTTTAAGCGACCTAT
TGACGTTTTGTCATCAGACATCACACCTATTTTGCATCAATATATTACGAACCAAAGTCCTTCTTCGTTACGATTGAAAC
TCCAAACATTTCATACATTAAGTGCTTCTGATATTTTACAACAACTCCGTCACGATAACATTTTTCCAATCACTCTATTA
GATGAGCAATTCCCAACCCTTTTAAAAGAAATTTACCAACCGCCACTTTTATTATTTTGTAAAGGCGACCTCTCATACGT
TACCGCTTCAAAGTACAAACTCAGCATAGTGGGTGCACGTGACTGTACGCTTTATAGCGAAAAAGCTGTCAATTATCTTC
TTCAAGAGATGAAACATGCGCCTTTAATCATTGTATCTGGTCTTGCGAAAGGAACAGATGCACTTGCGCATGATTACGCG
CTCAAATATTCATTACCTACAATAGGTGTGTTAGGGTTTGGGCATCATTATCATTATCCTTCAGTAACAAAATCACTTCG
ACACACAATTGAAATGAACGGACGAGGATTAACTATCAGTGAATATCCTCCCATGACGCCACCCGCAAAATTCCGTTTTC
CTGAACGTAATCGTATAATCAGTGGTCTGAGCCATGGCGTTCTAGTTACAGAAGCAAAAGAGAAAAGTGGTGCACTTATC
ACGTTAGATCAAGCATTAGAACATAATCGAAATGTGTATGTACTCCCTGGAGATATGTTTAATAAACACACAAAAGGTAA
TATGATGCGTATTAAGGAAGGTGCTGAAATTGTACTTTCAGCAACAGATATTTTGAAAGATTTGAATACGTCAATTCAGT
GA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(70-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

51.228

97.27

0.498
  dprA Staphylococcus aureus N315

51.228

97.27

0.498
  dprA Streptococcus mutans UA159

36.149

100

0.365