Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   OIE83_RS23925 Genome accession   NZ_CP109188
Coordinates   5281060..5282358 (+) Length   432 a.a.
NCBI ID   WP_099172566.1    Uniprot ID   A0ABU8A0E2
Organism   Streptomyces sp. NBC_01708     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 5276060..5287358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE83_RS23890 (OIE83_23880) - 5276606..5276800 (+) 195 WP_073746901.1 hypothetical protein -
  OIE83_RS23895 (OIE83_23885) - 5276920..5277267 (+) 348 WP_129262945.1 DUF1330 domain-containing protein -
  OIE83_RS23910 (OIE83_23900) tig 5277834..5279246 (+) 1413 WP_099172567.1 trigger factor -
  OIE83_RS23915 (OIE83_23905) - 5279547..5280152 (+) 606 WP_099172994.1 ATP-dependent Clp protease proteolytic subunit -
  OIE83_RS23920 (OIE83_23910) clpP 5280220..5280903 (+) 684 WP_031091966.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OIE83_RS23925 (OIE83_23915) clpX 5281060..5282358 (+) 1299 WP_099172566.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OIE83_RS23930 (OIE83_23920) - 5282456..5282842 (+) 387 WP_147985112.1 type II toxin-antitoxin system RelE/ParE family toxin -
  OIE83_RS23935 (OIE83_23925) - 5282839..5283144 (+) 306 WP_124276497.1 helix-turn-helix transcriptional regulator -
  OIE83_RS23940 (OIE83_23930) - 5283296..5284315 (-) 1020 WP_329211054.1 hypothetical protein -
  OIE83_RS23945 (OIE83_23935) - 5284453..5287074 (+) 2622 WP_329042646.1 valine--tRNA ligase -

Sequence

Protein


Download         Length: 432 a.a.        Molecular weight: 47329.15 Da        Isoelectric Point: 4.8249

>NTDB_id=672409 OIE83_RS23925 WP_099172566.1 5281060..5282358(+) (clpX) [Streptomyces sp. NBC_01708]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEP
AKKALSVAVYNHYKRVQAGENGGGANRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKLEIQASDQFQEVMPEDLVKFGMIPEFIGRLPVLTSVHNLDR
EALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLQSVMYDVPSRKDVARVVIT
PDVVRNNVNPTLVPREPRTIGKNDGGRHEKSA

Nucleotide


Download         Length: 1299 bp        

>NTDB_id=672409 OIE83_RS23925 WP_099172566.1 5281060..5282358(+) (clpX) [Streptomyces sp. NBC_01708]
GTGGCACGCATCGGTGATGGCGGCGACCTGCTCAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCGGGACCCGGTGTGTACATCTGCGACGAGTGCATCGATCTCTGCAACGAGATCATCGAGGAGGAGCTCGCCGAGACCT
CCGAGGTGCGGTGGGAGGAGCTCCCCAAGCCGCGCGAGATCTACGAGTTCCTCGAGGGGTACGTCGTCGGGCAGGAGCCC
GCGAAGAAGGCCCTCTCGGTCGCTGTGTACAACCACTACAAGCGGGTCCAGGCCGGGGAGAACGGCGGCGGCGCGAATCG
CGACGACGCGATCGAGCTCGCCAAGTCCAACATCCTGCTGCTGGGTCCCACGGGCTCCGGCAAGACGCTCCTCGCGCAGA
CGCTGGCCCGCATGCTCAACGTCCCGTTCGCCATCGCGGACGCGACGGCGCTGACGGAGGCCGGCTACGTCGGCGAGGAC
GTCGAGAACATCCTGCTGAAGCTGATCCAGGCCGCTGACTACGACGTCAAGAAGGCCGAGACCGGCATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACGCGCGACGTATCGGGCGAGGGCGTCCAGCAGGCCC
TGCTGAAGATCCTGGAGGGCACCACCGCCTCCGTGCCGCCGCAGGGCGGACGGAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTCCTGTTCATCGTGGGCGGCGCCTTCTCGGGTCTGGAGAAGATCATCGAGTCGCGGGCCGGCGC
GAAGGGCATCGGTTTCGGCGCCACGATCCGCTCCAAGCTGGAGATCCAGGCGAGCGACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCCGAGTTCATCGGCCGCCTCCCCGTGCTGACCTCGGTCCACAACCTGGACCGC
GAGGCGCTGCTCCAGATCCTGGTCGAGCCGCGTAACGCGCTGGTGAAGCAGTACCAAAGGCTGTTCGAACTCGACGGTGT
GGAGCTGGACTTCGAGCGCGAGGCGCTGGAAGCCATCGCCGACCAGGCGATCCTCCGCCAGACGGGCGCGCGCGGTCTGC
GCGCCATCATGGAGGAAGTCCTCCAGTCCGTGATGTACGACGTCCCGTCCCGCAAGGACGTGGCCCGCGTGGTCATCACC
CCGGACGTCGTGCGCAACAACGTCAACCCGACGCTGGTCCCGCGCGAGCCGCGCACGATCGGCAAGAACGACGGCGGCCG
CCACGAGAAGTCCGCGTAG

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(115-311)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(318-395)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

63.682

93.056

0.593
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.155

95.37

0.507