Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SITYG_RS02185 Genome accession   NZ_AP014880
Coordinates   421099..423057 (+) Length   652 a.a.
NCBI ID   WP_096362557.1    Uniprot ID   A0AAD1FIY3
Organism   Streptococcus intermedius strain TYG1620     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 416099..428057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SITYG_RS02165 (SITYG_04070) rsmH 416174..417124 (+) 951 WP_020999024.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  SITYG_RS02170 (SITYG_04080) ftsL 417133..417450 (+) 318 WP_096362556.1 cell division protein FtsL -
  SITYG_RS02175 (SITYG_04090) pbp2X 417454..419712 (+) 2259 WP_003078331.1 penicillin-binding protein PBP2X -
  SITYG_RS02180 (SITYG_04100) mraY 419714..420697 (+) 984 WP_003078417.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -
  SITYG_RS02185 (SITYG_04110) amiA 421099..423057 (+) 1959 WP_096362557.1 peptide ABC transporter substrate-binding protein Regulator
  SITYG_RS02195 (SITYG_04120) - 423348..423911 (+) 564 Protein_403 glutamine amidotransferase-related protein -
  SITYG_RS02200 (SITYG_04130) - 423962..424372 (+) 411 WP_003073787.1 GyrI-like domain-containing protein -
  SITYG_RS02210 (SITYG_04140) - 424785..425666 (+) 882 WP_003073785.1 class II fructose-bisphosphate aldolase -
  SITYG_RS02220 (SITYG_04150) - 426105..426551 (+) 447 WP_096362558.1 LytTR family DNA-binding domain-containing protein -
  SITYG_RS02225 (SITYG_04160) - 426557..427219 (+) 663 WP_096362559.1 LiaF transmembrane domain-containing protein -
  SITYG_RS02230 (SITYG_04170) rpmB 427354..427542 (+) 189 WP_003025909.1 50S ribosomal protein L28 -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72562.12 Da        Isoelectric Point: 9.1519

>NTDB_id=67239 SITYG_RS02185 WP_096362557.1 421099..423057(+) (amiA) [Streptococcus intermedius strain TYG1620]
MKSSKWIIATGVVLSAGILLAGCGKSSSSTSTYSYVYTQDPDTLNYLMANRATTSDVVTNLVDGLLENDRYGNLVPALAK
SWTVSKDGLTYTYKLRKDAKWYTSEGEEYAGVKAQDFVTGLKYAADNKSEALYLVQDSVKGLDAYIKGETKDFSKVGVKA
IDDYTVQYTLSRAETYWNSKTTNNILFPVNAAFLKSQGKNFGSVKPSSILYNGPYLLKSLTAKSSMEFAKNPHYYDKKNV
HLDNIKLTYYDGSDQEALIRNFTEGAYSAARLYPNSSSFASVKKQYNNNIIYSLQDATSYYYNFNLNRQSYHHTSKKTDA
QKTATQEAVLNKAFRQAINFAYNRMSYGAQSNGKDGATKVLRNTLVPPTFVSIGDKTFGDLVSSKLVKYGSEWSDMNLAD
AQDAYYNPAKAKAKFAQAKAELQAKGVQFPIHLDVPADQTSKIGVQWESSMKQSVESVLGKDNVVIDIQQMSSDELNNIG
YFANTAAQKDYDLYNGGWSGDYQDPSTYLDTLNTKNGGSLKNFGLEPGQENDKIKTVGLDTYTTMLEEANAETNEMKRYE
KYAEAQAWLIDSGLTMPNLSLGGTPSVTKTVPFSRSYSLVGIKGGSSNYFKYVKLQDKIVTTKEYESAKKKWLKEKEASN
KKAQDNYENHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=67239 SITYG_RS02185 WP_096362557.1 421099..423057(+) (amiA) [Streptococcus intermedius strain TYG1620]
ATGAAATCATCAAAATGGATTATTGCAACGGGAGTTGTACTAAGTGCTGGAATTTTATTGGCTGGTTGTGGCAAGTCAAG
CTCTAGCACATCGACATATTCATATGTGTATACACAAGACCCAGATACGCTGAATTATTTGATGGCGAATCGAGCAACAA
CATCAGATGTTGTTACCAATTTAGTTGATGGATTATTAGAAAATGACCGATACGGGAACTTAGTTCCAGCACTCGCTAAG
TCATGGACAGTCTCCAAAGATGGTTTGACGTATACGTATAAATTACGTAAAGACGCGAAATGGTACACATCAGAAGGCGA
AGAGTACGCAGGTGTAAAAGCACAAGACTTTGTAACTGGTTTGAAATATGCTGCAGATAACAAATCCGAAGCTCTTTACC
TTGTACAAGACTCTGTCAAAGGATTAGATGCGTATATCAAAGGGGAGACAAAAGATTTTTCAAAAGTAGGTGTAAAAGCT
ATTGATGATTATACAGTACAGTATACTCTGAGTCGTGCAGAAACTTATTGGAATTCAAAAACAACCAATAACATCCTCTT
CCCAGTCAATGCAGCCTTCTTAAAATCCCAAGGAAAGAATTTTGGTTCTGTAAAACCGAGTAGCATTCTTTACAACGGTC
CATATCTGCTGAAGTCTTTGACGGCTAAATCCTCTATGGAATTTGCAAAAAATCCTCATTATTATGACAAAAAGAATGTT
CATTTAGACAATATAAAGTTGACATATTATGATGGATCGGACCAAGAAGCGCTTATTCGAAACTTTACTGAGGGTGCTTA
TAGTGCAGCTCGTCTTTATCCAAATAGTTCTAGTTTTGCTTCTGTTAAGAAACAGTATAATAACAATATCATCTATAGTT
TACAAGATGCGACCAGTTACTATTATAACTTTAACTTAAATCGTCAGTCTTATCACCATACATCTAAGAAAACAGATGCT
CAAAAAACTGCAACACAGGAAGCAGTACTCAATAAAGCATTTCGTCAAGCAATCAATTTCGCCTACAATCGAATGTCTTA
TGGTGCGCAAAGCAATGGGAAAGATGGAGCGACAAAAGTATTGCGGAATACACTTGTTCCACCAACGTTTGTTTCAATTG
GTGATAAAACATTTGGGGATCTCGTATCTTCCAAATTGGTGAAGTACGGTTCAGAATGGTCTGATATGAATTTGGCTGAT
GCACAGGATGCTTACTACAATCCAGCAAAGGCAAAAGCAAAATTTGCACAAGCAAAAGCAGAGTTGCAAGCTAAAGGAGT
TCAGTTCCCAATTCATTTGGATGTACCGGCTGATCAGACAAGTAAAATTGGTGTTCAATGGGAAAGTTCTATGAAACAAT
CTGTTGAGTCTGTTTTAGGAAAGGATAATGTTGTCATTGATATTCAACAAATGAGTTCAGATGAACTGAACAACATTGGC
TACTTTGCTAATACTGCTGCTCAAAAAGATTATGATTTATACAATGGTGGATGGTCAGGGGATTATCAAGATCCGTCAAC
TTATCTAGATACCTTGAATACAAAAAATGGTGGTAGTTTGAAGAACTTTGGCTTGGAACCTGGTCAAGAGAACGATAAGA
TAAAAACTGTTGGTTTGGATACCTATACTACAATGCTTGAGGAAGCAAATGCTGAAACCAATGAGATGAAGCGTTATGAG
AAATATGCTGAAGCGCAGGCGTGGTTAATTGATAGTGGGTTGACAATGCCAAATCTTTCTCTTGGAGGAACACCATCTGT
GACAAAGACAGTTCCGTTTAGCCGTTCATATTCTTTAGTAGGAATTAAGGGTGGTTCAAGCAACTATTTTAAATATGTTA
AGTTGCAAGATAAAATTGTGACGACCAAAGAATACGAAAGTGCTAAAAAGAAATGGCTGAAAGAAAAAGAAGCTTCTAAT
AAAAAAGCACAAGATAACTATGAAAATCATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.686

100

0.581
  amiA3 Streptococcus thermophilus LMD-9

57.23

100

0.577
  amiA3 Streptococcus thermophilus LMG 18311

57.078

100

0.575

Multiple sequence alignment