Detailed information NTG0067214

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: SCL_RS04460
• Genome accession: NZ_AP014879
• Coordinates: 907376..908749 (-)
• Length: 457 a.a.
• NCBI ID: WP_096360110.1
• Uniprot ID: -
• Organism: Sulfuricaulis limicola strain HA5
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 902376..913749

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SCL_RS04440 (SCL_0906)	-	902509..904419 (-)	1911	WP_096360106.1	hypothetical protein	-
SCL_RS04445 (SCL_0907)	-	904424..906379 (-)	1956	WP_096360107.1	tetratricopeptide repeat protein	-
SCL_RS14470 (SCL_0908)	-	906553..906987 (-)	435	WP_096360108.1	pilin	-
SCL_RS04460 (SCL_0909)	pilR	907376..908749 (-)	1374	WP_096360110.1	sigma-54-dependent transcriptional regulator	Regulator
SCL_RS04465 (SCL_0910)	-	908746..910416 (-)	1671	WP_172425922.1	sensor histidine kinase	-
SCL_RS14550 (SCL_0911)	-	910561..910788 (-)	228	WP_420823630.1	PP0621 family protein	-
SCL_RS04480 (SCL_0913)	ispB	910983..911951 (-)	969	WP_096360113.1	octaprenyl diphosphate synthase	-
SCL_RS04485 (SCL_0914)	rplU	912114..912422 (+)	309	WP_096360114.1	50S ribosomal protein L21	-
SCL_RS04490 (SCL_0915)	rpmA	912442..912699 (+)	258	WP_096360115.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 50213.71 Da
• Isoelectric Point: 5.7534

>NTDB_id=67214 SCL_RS04460 WP_096360110.1 907376..908749(-) (pilR) [Sulfuricaulis limicola strain HA5]
MNKPKNQILIVDDEPDIREVLELTLGRMNLETRSASNLEEARHLIEDYKFDLCLTDMRLPDGNGIELVRHIQDKHPYLPV
AVITAFGNMETAVAALKAGAFDFVSKPLDLNDLRNIVRAALRVGQAPVAKTAVSSGEAPETGTGARKMLGQSAAVEKVRA
MIERLARGQAPVYIAGESGTGKELAARLIHELGPRADKPFVPVNCGAIPESLMESEFFGHKKGSFTGAVTDKDGLFKAAD
GGTLFLDEVGDLPLSMQVKLLRAIQEKSVRPVGAQSEIKVDVRILSATHKNLHDLVAQGKFRQDLYYRLNVIELMIPPLR
DRVEDIPLLAEALCRKLSDNMGMKPPRLTTDAAEALQRYSFAGNVRELENTLERALTLCNGTEITAQDLQLHVAVDESEA
ETVMGGKESLDDYLERIERATIEKALAQTQQNKTAAAKLLGISFRALRYKLEKLGIE

Nucleotide

• Length: 1374 bp

>NTDB_id=67214 SCL_RS04460 WP_096360110.1 907376..908749(-) (pilR) [Sulfuricaulis limicola strain HA5]
ATGAACAAGCCGAAAAACCAGATTCTGATCGTTGACGACGAACCGGACATTCGCGAAGTTCTCGAATTGACGCTGGGGCG
CATGAATCTCGAAACGCGTTCGGCCTCGAACCTCGAGGAGGCGCGTCATCTGATCGAGGATTACAAATTCGATCTGTGCC
TGACCGACATGCGACTGCCGGACGGCAACGGCATCGAGCTGGTGCGCCACATTCAGGACAAGCACCCTTACCTGCCGGTA
GCGGTCATCACCGCCTTCGGCAACATGGAAACCGCCGTGGCCGCGCTCAAGGCCGGCGCCTTCGATTTCGTCTCCAAACC
CCTCGATCTCAACGACCTGCGCAACATCGTGCGCGCCGCCCTGCGCGTGGGACAGGCGCCGGTGGCAAAAACAGCTGTCA
GCAGCGGCGAGGCCCCGGAAACCGGAACCGGCGCCAGGAAAATGCTGGGCCAGTCCGCCGCGGTCGAAAAAGTACGGGCC
ATGATCGAGCGGCTCGCCCGCGGACAGGCACCGGTCTATATCGCCGGCGAGTCCGGCACCGGCAAGGAACTGGCGGCGCG
CCTGATTCATGAGCTGGGTCCACGCGCGGACAAGCCTTTCGTGCCGGTCAATTGCGGGGCCATCCCCGAAAGTCTCATGG
AAAGTGAATTTTTCGGTCACAAGAAAGGCAGCTTCACCGGCGCGGTGACGGACAAGGACGGTCTGTTCAAGGCCGCCGAC
GGCGGCACGCTGTTTCTCGACGAGGTCGGCGACCTGCCCCTGTCCATGCAGGTCAAGCTGCTGCGCGCGATTCAGGAAAA
ATCCGTCCGTCCCGTGGGCGCGCAGAGCGAGATCAAGGTGGACGTGCGCATCCTCTCGGCCACCCACAAAAACCTGCACG
ACCTGGTGGCGCAGGGAAAATTCCGCCAGGACCTGTACTACCGGCTGAATGTCATCGAACTCATGATCCCGCCGTTGCGC
GATCGCGTCGAGGATATCCCGCTGCTGGCGGAAGCCTTGTGCCGCAAGTTATCCGACAACATGGGCATGAAACCACCGCG
CCTGACGACGGACGCGGCCGAGGCCTTGCAGCGCTACAGCTTCGCCGGCAACGTGCGCGAACTGGAAAATACCCTCGAGC
GCGCCCTGACCCTGTGCAACGGCACGGAAATCACGGCGCAGGATTTGCAGCTTCATGTAGCCGTGGACGAAAGTGAGGCG
GAGACCGTCATGGGCGGCAAGGAATCGCTGGATGACTATCTCGAACGGATCGAGCGCGCCACGATCGAAAAGGCCCTGGC
CCAGACCCAGCAGAACAAGACCGCCGCCGCCAAGCTCCTCGGGATCAGCTTCCGCGCCCTGCGCTACAAGCTGGAGAAGC
TCGGAATCGAATAA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (149-314)

• Response regulator receiver domain (Response_reg) (8-117)

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	61.233	99.344	0.608
pilR	Acinetobacter baumannii strain A118	45.957	100	0.473