Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUA20_RS11260 Genome accession   NZ_CP094742
Coordinates   2231110..2231613 (-) Length   167 a.a.
NCBI ID   WP_037575408.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain IVB6199     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2226110..2236613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA20_RS11230 (MUA20_11180) - 2226561..2227781 (-) 1221 WP_262621137.1 glycerate kinase -
  MUA20_RS11235 (MUA20_11185) chrA 2227901..2229058 (-) 1158 WP_262621138.1 chromate efflux transporter -
  MUA20_RS11240 (MUA20_11190) - 2229069..2229371 (-) 303 WP_262621139.1 PadR family transcriptional regulator -
  MUA20_RS11245 (MUA20_11195) - 2229533..2229808 (+) 276 WP_262621140.1 iron chaperone -
  MUA20_RS11250 (MUA20_11200) - 2230003..2230677 (-) 675 WP_262621141.1 CPBP family intramembrane glutamic endopeptidase -
  MUA20_RS11255 (MUA20_11205) rpsR 2230824..2231066 (-) 243 WP_037565082.1 30S ribosomal protein S18 -
  MUA20_RS11260 (MUA20_11210) ssbA 2231110..2231613 (-) 504 WP_037575408.1 single-stranded DNA-binding protein Machinery gene
  MUA20_RS11265 (MUA20_11215) rpsF 2231637..2231933 (-) 297 WP_037565086.1 30S ribosomal protein S6 -
  MUA20_RS11270 (MUA20_11220) - 2232247..2232882 (+) 636 WP_262621142.1 NAD(P)-dependent oxidoreductase -
  MUA20_RS11275 (MUA20_11225) ychF 2233672..2234769 (-) 1098 WP_262621143.1 redox-regulated ATPase YchF -
  MUA20_RS11280 (MUA20_11230) - 2234776..2234982 (-) 207 WP_037575399.1 DUF951 domain-containing protein -
  MUA20_RS11285 (MUA20_11235) - 2235018..2235908 (-) 891 WP_262621144.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18556.10 Da        Isoelectric Point: 4.9056

>NTDB_id=671774 MUA20_RS11260 WP_037575408.1 2231110..2231613(-) (ssbA) [Staphylococcus chromogenes strain IVB6199]
MLNRVVLVGRLTKDPEYRTTPSGVGVATFTLAVNRTFTNNQGEREADFINCVVFRKQAENVSNFLFKGSLAGVDGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKSQNQRHSNNQGNDFQSYGQGFGGQQQGQNSSYQNNNSSSNNDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=671774 MUA20_RS11260 WP_037575408.1 2231110..2231613(-) (ssbA) [Staphylococcus chromogenes strain IVB6199]
ATGCTTAACAGAGTTGTATTAGTAGGTCGATTAACTAAAGATCCAGAATACAGAACGACGCCCTCAGGTGTAGGCGTAGC
GACTTTCACATTAGCTGTGAATCGTACGTTTACAAACAACCAAGGGGAACGTGAAGCAGACTTTATTAACTGTGTTGTTT
TTAGAAAGCAAGCAGAGAACGTGAGCAATTTCTTGTTCAAGGGAAGTCTGGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAATCAAGAAGGCCGACGTGTCTATGTGACGGAGGTCGTTTGTGACAGTGTTCAATTCCTTGAACCGAAATC
ACAAAACCAACGTCATTCGAATAACCAAGGCAATGACTTCCAAAGTTATGGCCAAGGATTCGGTGGACAACAACAAGGTC
AAAATTCGTCATATCAAAATAACAATTCATCATCTAACAATGATAACCCATTTGCGAATGCGAATGGTCCTATCGACATT
AGCGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

57.31

100

0.587
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.868

0.383