Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUA19_RS11325 Genome accession   NZ_CP094741
Coordinates   2336390..2336893 (-) Length   167 a.a.
NCBI ID   WP_037575408.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain IVB6200     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2331390..2341893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA19_RS11295 (MUA19_11275) - 2331920..2332935 (+) 1016 Protein_2179 methionine ABC transporter ATP-binding protein -
  MUA19_RS11300 (MUA19_11280) - 2332937..2333596 (+) 660 WP_107367115.1 methionine ABC transporter permease -
  MUA19_RS11305 (MUA19_11285) gmpC 2333609..2334451 (+) 843 WP_262616776.1 dipeptide ABC transporter glycylmethionine-binding lipoprotein -
  MUA19_RS11310 (MUA19_11290) tnpA 2334644..2335102 (+) 459 WP_103345497.1 IS200/IS605 family transposase -
  MUA19_RS11315 (MUA19_11295) - 2335282..2335956 (-) 675 WP_262616777.1 CPBP family intramembrane glutamic endopeptidase -
  MUA19_RS11320 (MUA19_11300) rpsR 2336104..2336346 (-) 243 WP_037565082.1 30S ribosomal protein S18 -
  MUA19_RS11325 (MUA19_11305) ssbA 2336390..2336893 (-) 504 WP_037575408.1 single-stranded DNA-binding protein Machinery gene
  MUA19_RS11330 (MUA19_11310) rpsF 2336917..2337213 (-) 297 WP_262616778.1 30S ribosomal protein S6 -
  MUA19_RS11335 (MUA19_11315) - 2337527..2338162 (+) 636 WP_262616779.1 NAD(P)-dependent oxidoreductase -
  MUA19_RS11340 (MUA19_11320) - 2338689..2338910 (+) 222 WP_105986425.1 hypothetical protein -
  MUA19_RS11345 (MUA19_11325) ychF 2339012..2340109 (-) 1098 WP_037575402.1 redox-regulated ATPase YchF -
  MUA19_RS11350 (MUA19_11330) - 2340116..2340322 (-) 207 WP_037575399.1 DUF951 domain-containing protein -
  MUA19_RS11355 (MUA19_11335) - 2340358..2341248 (-) 891 WP_107358759.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18556.10 Da        Isoelectric Point: 4.9056

>NTDB_id=671742 MUA19_RS11325 WP_037575408.1 2336390..2336893(-) (ssbA) [Staphylococcus chromogenes strain IVB6200]
MLNRVVLVGRLTKDPEYRTTPSGVGVATFTLAVNRTFTNNQGEREADFINCVVFRKQAENVSNFLFKGSLAGVDGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKSQNQRHSNNQGNDFQSYGQGFGGQQQGQNSSYQNNNSSSNNDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=671742 MUA19_RS11325 WP_037575408.1 2336390..2336893(-) (ssbA) [Staphylococcus chromogenes strain IVB6200]
ATGCTTAACAGAGTTGTATTAGTAGGTCGATTAACTAAAGATCCAGAATACAGAACGACGCCCTCAGGTGTAGGCGTAGC
AACGTTCACATTAGCTGTGAATCGTACGTTTACAAACAACCAAGGGGAACGTGAAGCAGACTTTATTAACTGTGTTGTTT
TTAGAAAGCAAGCAGAGAACGTGAGCAATTTCTTGTTCAAGGGAAGTCTGGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTCTATGTGACGGAGGTCGTTTGTGACAGTGTTCAATTCCTTGAACCGAAATC
ACAAAACCAACGTCATTCGAATAACCAAGGCAATGACTTCCAAAGTTATGGCCAAGGATTCGGTGGACAACAACAAGGTC
AAAATTCGTCATATCAAAATAACAATTCATCATCTAACAATGATAACCCATTTGCGAATGCGAACGGTCCTATCGACATT
AGCGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

57.31

100

0.587
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.868

0.383