Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUA34_RS12815 Genome accession   NZ_CP094738
Coordinates   2660690..2661193 (-) Length   167 a.a.
NCBI ID   WP_096539724.1    Uniprot ID   A0AAQ0M749
Organism   Staphylococcus delphini strain IVB6220     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2655690..2666193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA34_RS12795 (MUA34_12770) - 2656880..2658871 (+) 1992 Protein_2500 catalase -
  MUA34_RS12800 (MUA34_12775) - 2658948..2659286 (-) 339 WP_262610886.1 hypothetical protein -
  MUA34_RS12805 (MUA34_12780) - 2659262..2660179 (-) 918 WP_262610888.1 MFS transporter -
  MUA34_RS12810 (MUA34_12785) rpsR 2660395..2660637 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  MUA34_RS12815 (MUA34_12790) ssbA 2660690..2661193 (-) 504 WP_096539724.1 single-stranded DNA-binding protein Machinery gene
  MUA34_RS12820 (MUA34_12795) rpsF 2661216..2661512 (-) 297 WP_014614921.1 30S ribosomal protein S6 -
  MUA34_RS13040 - 2661855..2662301 (+) 447 WP_316960885.1 B domain-containing protein -
  MUA34_RS12825 (MUA34_12800) - 2662332..2663330 (+) 999 WP_316960076.1 C3-binding domain-containing protein -
  MUA34_RS12830 (MUA34_12805) - 2663384..2664193 (-) 810 WP_096648970.1 ABC transporter permease -
  MUA34_RS12835 (MUA34_12810) - 2664195..2665139 (-) 945 Protein_2509 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18610.29 Da        Isoelectric Point: 5.1957

>NTDB_id=671648 MUA34_RS12815 WP_096539724.1 2660690..2661193(-) (ssbA) [Staphylococcus delphini strain IVB6220]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNHQPANDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=671648 MUA34_RS12815 WP_096539724.1 2660690..2661193(-) (ssbA) [Staphylococcus delphini strain IVB6220]
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGTGTTGTTT
TCCGTAAACAAGCAGAAAATGTTAACAATTTCTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAACCAGAACCAAGGTAATCAATTCGATAGCTACGGTCAAGGTTTCGGTGGACAACAACAAG
GCCAAAATTCGTCTTACCAAAACAATCATCAACCAGCTAACGATAACCCATTTGCGAATGCGAACGGCCCTATCGATATT
AGCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.143

100

0.683
  ssb Latilactobacillus sakei subsp. sakei 23K

56.725

100

0.581
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.868

0.383