Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   OHA26_RS11425 Genome accession   NZ_CP109136
Coordinates   2484361..2486481 (-) Length   706 a.a.
NCBI ID   WP_326816871.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01751     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2479361..2491481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA26_RS11405 (OHA26_11410) - 2479557..2480213 (+) 657 WP_326631154.1 MBL fold metallo-hydrolase -
  OHA26_RS11410 (OHA26_11415) - 2480264..2481265 (-) 1002 WP_326631153.1 TerC family protein -
  OHA26_RS11415 (OHA26_11420) - 2481520..2483472 (-) 1953 WP_326631151.1 TerD family protein -
  OHA26_RS11420 (OHA26_11425) - 2483650..2484228 (-) 579 WP_030919738.1 TerD family protein -
  OHA26_RS11425 (OHA26_11430) uvrB 2484361..2486481 (-) 2121 WP_326816871.1 excinuclease ABC subunit UvrB Machinery gene
  OHA26_RS11430 (OHA26_11435) - 2486522..2487412 (-) 891 WP_326631148.1 MHYT domain-containing protein -
  OHA26_RS11435 (OHA26_11440) - 2487628..2488587 (+) 960 WP_326631146.1 glycerophosphodiester phosphodiesterase family protein -
  OHA26_RS11440 (OHA26_11445) - 2488645..2489211 (+) 567 WP_326814235.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  OHA26_RS11445 (OHA26_11450) - 2489281..2490573 (+) 1293 WP_326631143.1 MFS transporter -
  OHA26_RS11450 (OHA26_11455) - 2490655..2491017 (-) 363 WP_267005746.1 cupin domain-containing protein -

Sequence

Protein


Download         Length: 706 a.a.        Molecular weight: 79523.33 Da        Isoelectric Point: 4.8294

>NTDB_id=671472 OHA26_RS11425 WP_326816871.1 2484361..2486481(-) (uvrB) [Streptomyces sp. NBC_01751]
MRPVSKIERSVAPFEVVSSYQPSGDQPAAIAELERRIRAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYIPQSDTYIEKDSSINDEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLKVGDEIDRDQLLRRFVEIQYTRNDIAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVISEDNELYVFPASHYVAGPERMEKAVNGIEQELEHRLAELEKQGKLLEAQRLRMRTTYDIEMMRQIGTCSGIENYSMH
MDGREPGTAPNTLLDYFPEDFLLVIDESHVTVPQIGAMYEGDASRKRSLVDHGFRLPSALDNRPLRWEEFVERIGQTVYL
SATPGKYELSRGDGFVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRKRTERDERVLVTTLTKKMSEDLTDYFLELGIQV
RYLHSDVDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPAMEKAIDETNRRREKQIAYNTERGIDPQPLRKKINDIVATIAREEIDTEELLGTGYRQTKGDKAPVPALGGKAG
KAAGAKKVGAVVTDRPATELAGIIEEMTDRMRAAAADLQFEVAARLRDEVGELKKELRQMREAGLA

Nucleotide


Download         Length: 2121 bp        

>NTDB_id=671472 OHA26_RS11425 WP_326816871.1 2484361..2486481(-) (uvrB) [Streptomyces sp. NBC_01751]
ATGCGGCCCGTTTCGAAGATCGAACGTTCGGTGGCGCCTTTCGAGGTCGTCAGTTCCTACCAGCCCAGCGGCGACCAGCC
CGCGGCCATCGCCGAGCTGGAACGGCGCATCCGGGCAGGTGAGAAGGATGTCGTGCTGCTCGGCGCGACCGGCACCGGGA
AATCGGCGACCACCGCCTGGATGATCGAGAAGCTCCAGCGCCCCACGCTGGTGATGGCGCCGAACAAGACCCTCGCGGCC
CAGCTGGCGAACGAGTTCCGCGAACTGCTCCCGAACAACGCCGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACATTCCGCAGTCGGACACGTACATCGAGAAGGATTCGTCGATCAACGACGAGGTCGAGCGGCTGCGCCACT
CCGCGACGAATTCGCTGCTCACCCGCCGTGACGTGGTCGTGGTCGCCTCGGTGTCCTGCATCTACGGCCTCGGTACGCCA
CAGGAGTACGTGGACCGCATGGTCCCGCTCAAGGTGGGCGACGAGATCGACCGCGACCAGCTGCTGCGCCGCTTCGTGGA
GATCCAGTACACCCGCAACGACATCGCGTTCACCCGGGGCACCTTCCGGGTGCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTCGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCGCTCTCCACCCTCCATCCGCTCACCGGC
GAGGTCATCAGCGAGGACAACGAGCTCTATGTCTTCCCCGCCAGCCACTACGTGGCGGGACCGGAGCGCATGGAGAAGGC
GGTCAACGGCATCGAGCAGGAGCTGGAGCACCGCCTCGCCGAGCTGGAGAAGCAGGGCAAGCTGCTGGAGGCCCAGCGGC
TGCGGATGCGCACCACGTACGACATCGAGATGATGCGCCAGATCGGCACCTGCTCCGGTATCGAGAACTACTCGATGCAC
ATGGACGGCCGCGAGCCCGGCACCGCCCCCAACACCCTCCTCGACTACTTCCCCGAGGACTTCCTGCTCGTCATCGACGA
GTCGCATGTCACCGTGCCGCAGATCGGCGCCATGTACGAGGGCGACGCCTCCCGCAAGCGCAGCCTCGTCGACCACGGCT
TCCGGCTGCCGTCCGCCCTCGACAACCGCCCTCTGAGGTGGGAGGAGTTCGTGGAGCGGATCGGTCAGACCGTCTATCTC
TCCGCCACCCCGGGCAAGTACGAGCTGTCCCGCGGCGACGGGTTCGTGGAGCAGATCATCCGGCCCACCGGCCTCGTCGA
CCCGGAGGTCGTCGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGCAAGCGCACCGAGAGGGACG
AGCGGGTCCTGGTCACCACCCTCACCAAGAAGATGTCCGAAGACCTCACGGACTACTTCCTGGAGCTGGGCATCCAGGTC
CGTTATCTGCACAGTGACGTCGACACGCTGCGCCGCATCGAGCTGCTGCGTGAACTGCGCGCCGGTGAGTACGACGTGCT
GGTCGGGATCAACCTCCTGCGCGAGGGGCTCGACCTGCCCGAGGTGTCTCTGGTGGCCATCCTCGACGCCGACAAGCAGG
GCTTCCTGCGCTCCGGGACGTCTCTCATCCAGACCATCGGCCGCGCGGCCCGCAATGTGTCCGGCCAGGTCCATATGTAC
GCCGACAAGATCACCCCGGCGATGGAGAAGGCCATCGACGAGACCAACCGCCGCCGGGAGAAGCAGATCGCGTACAACAC
CGAGCGCGGCATCGACCCGCAGCCGCTGCGCAAGAAGATCAACGACATCGTCGCGACGATCGCCCGCGAGGAGATCGACA
CCGAGGAGCTGCTCGGCACCGGCTACCGCCAGACGAAGGGCGACAAGGCCCCGGTCCCCGCGCTCGGCGGCAAGGCGGGC
AAGGCGGCCGGAGCCAAGAAGGTCGGCGCGGTGGTCACCGACCGGCCCGCGACCGAGCTCGCCGGGATCATCGAGGAGAT
GACCGACCGGATGCGGGCAGCCGCCGCGGACCTGCAGTTCGAGGTGGCCGCCCGACTGCGCGACGAGGTCGGCGAGCTGA
AGAAGGAGCTGCGCCAGATGCGCGAGGCGGGCCTGGCCTGA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(24-144)

UvrB/uvrC motif (UVR)

(664-696)

Ultra-violet resistance protein B (UvrB)

(559-600)

Helicase conserved C-terminal domain (Helicase_C)

(440-551)

UvrB interaction domain (UvrB_inter)

(169-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.226

97.025

0.555
  uvrB Streptococcus pneumoniae R6

57.226

97.025

0.555
  uvrB Streptococcus pneumoniae D39

57.226

97.025

0.555