Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUA17_RS11930 Genome accession   NZ_CP094725
Coordinates   2480747..2481250 (-) Length   167 a.a.
NCBI ID   WP_103207848.1    Uniprot ID   A0A2K3ZHH0
Organism   Staphylococcus felis strain IVB6254     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2475747..2486250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA17_RS11900 (MUA17_11895) - 2476334..2476636 (-) 303 WP_116259379.1 PadR family transcriptional regulator -
  MUA17_RS11905 (MUA17_11900) - 2476772..2477149 (+) 378 WP_262632569.1 iron chaperone -
  MUA17_RS11910 (MUA17_11905) - 2477422..2478438 (+) 1017 WP_262632570.1 methionine ABC transporter ATP-binding protein -
  MUA17_RS11915 (MUA17_11910) - 2478440..2479099 (+) 660 WP_115871372.1 methionine ABC transporter permease -
  MUA17_RS11920 (MUA17_11915) gmpC 2479115..2479957 (+) 843 WP_262632571.1 dipeptide ABC transporter glycylmethionine-binding lipoprotein -
  MUA17_RS11925 (MUA17_11920) rpsR 2480460..2480702 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  MUA17_RS11930 (MUA17_11925) ssbA 2480747..2481250 (-) 504 WP_103207848.1 single-stranded DNA-binding protein Machinery gene
  MUA17_RS11935 (MUA17_11930) rpsF 2481274..2481570 (-) 297 WP_103207850.1 30S ribosomal protein S6 -
  MUA17_RS12315 - 2482133..2483107 (+) 975 Protein_2313 B domain-containing protein -
  MUA17_RS11945 (MUA17_11940) - 2483869..2484507 (+) 639 WP_116253746.1 NAD(P)-dependent oxidoreductase -
  MUA17_RS11950 (MUA17_11945) - 2484629..2485363 (-) 735 WP_262633231.1 HAD family hydrolase -
  MUA17_RS11955 (MUA17_11950) - 2485504..2485761 (-) 258 WP_262632573.1 hypothetical protein -
  MUA17_RS11960 (MUA17_11955) - 2486016..2486203 (+) 188 Protein_2317 DDE-type integrase/transposase/recombinase -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18660.30 Da        Isoelectric Point: 4.9305

>NTDB_id=671378 MUA17_RS11930 WP_103207848.1 2480747..2481250(-) (ssbA) [Staphylococcus felis strain IVB6254]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVSNFLFKGSLAGVDGRLQSR
SYENQEGRRIFVTEVVCDSVQFLEPKSQNQRHANNPGNDFQSYEQSFGGQQQGQNSSYQNNNQSSHNDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=671378 MUA17_RS11930 WP_103207848.1 2480747..2481250(-) (ssbA) [Staphylococcus felis strain IVB6254]
ATGCTTAACAGAGTCGTATTAGTAGGTCGATTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTTGC
GACTTTTACCTTAGCGGTTAATCGTACGTTTACGAATGCCCAAGGGGAACGTGAAGCGGACTTCATCAACTGTGTTGTTT
TCCGTAAACAAGCAGAAAACGTAAGTAACTTCTTATTTAAAGGAAGTCTTGCTGGCGTTGATGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTATATTCGTCACAGAAGTTGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAGCGTCATGCCAATAACCCAGGAAATGATTTCCAAAGTTATGAACAAAGTTTCGGTGGACAACAACAAGGCC
AAAATTCGTCATATCAAAACAACAATCAATCATCTCATAACGATAACCCATTTGCCAATGCGAATGGACCAATCGATATT
AGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K3ZHH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.205

100

0.677
  ssb Latilactobacillus sakei subsp. sakei 23K

57.31

100

0.587
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.273

65.868

0.377