Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MUA53_RS07300 Genome accession   NZ_CP094724
Coordinates   1473243..1474115 (-) Length   290 a.a.
NCBI ID   WP_002448769.1    Uniprot ID   -
Organism   Staphylococcus hominis strain IVB6247     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1468243..1479115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA53_RS07285 (MUA53_07270) xerC 1468704..1469597 (-) 894 WP_087436533.1 tyrosine recombinase XerC -
  MUA53_RS07290 (MUA53_07275) trmFO 1469703..1471010 (-) 1308 WP_002448834.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MUA53_RS07295 (MUA53_07280) topA 1471035..1473104 (-) 2070 WP_262617855.1 type I DNA topoisomerase -
  MUA53_RS07300 (MUA53_07285) dprA 1473243..1474115 (-) 873 WP_002448769.1 DNA-processing protein DprA Machinery gene
  MUA53_RS07305 (MUA53_07290) sucD 1474373..1475278 (-) 906 WP_002448725.1 succinate--CoA ligase subunit alpha -
  MUA53_RS07310 (MUA53_07295) sucC 1475300..1476466 (-) 1167 WP_002448800.1 ADP-forming succinate--CoA ligase subunit beta -
  MUA53_RS07315 (MUA53_07300) - 1476594..1477361 (-) 768 WP_002455424.1 ribonuclease HII -
  MUA53_RS07320 (MUA53_07305) ylqF 1477345..1478229 (-) 885 WP_049336491.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33521.62 Da        Isoelectric Point: 8.2454

>NTDB_id=671338 MUA53_RS07300 WP_002448769.1 1473243..1474115(-) (dprA) [Staphylococcus hominis strain IVB6247]
MNDFILLKMRWIGYTTQHIHHLLNVFPKFFNVNEHVQFEMINEWESLYLKKKRFTQLEEISYDYIQTQLSRSQVNYVTSF
SSQYPPLLKTIYDYPFILFYRGNIHLLSSTYTLGVVGSREATHYSKCALDYLFPHFINIPLTIVSGLAKGADSIAHQFAL
KHHLPTIAVLGFGHLNHYPKETRKLRNIIEETGLVISEYPPLTKINKYQFPERNRLISGLSRGVLITEAKIKSGSQITID
CALDQNRNVYVLPGSMFNPLTKGNLLRAQEGAMIVSEAEDILYDYCFLND

Nucleotide


Download         Length: 873 bp        

>NTDB_id=671338 MUA53_RS07300 WP_002448769.1 1473243..1474115(-) (dprA) [Staphylococcus hominis strain IVB6247]
ATGAATGATTTTATTTTATTAAAAATGAGATGGATAGGGTATACGACCCAACATATTCATCATTTACTCAATGTATTTCC
AAAATTTTTCAATGTTAATGAACATGTTCAATTTGAAATGATTAATGAATGGGAATCTCTATATTTAAAAAAGAAGCGTT
TTACTCAATTAGAAGAGATTTCTTACGATTACATTCAAACTCAACTTTCTAGATCTCAGGTTAACTATGTTACTTCATTT
TCTTCTCAATATCCTCCATTGCTTAAAACTATTTACGACTATCCTTTTATATTATTTTATCGTGGAAATATACATTTATT
ATCATCTACATATACTTTAGGTGTTGTAGGTTCACGTGAGGCCACACATTATTCTAAGTGTGCACTAGATTATCTATTTC
CTCACTTTATAAATATTCCACTAACGATTGTATCCGGTTTAGCGAAAGGTGCTGATAGCATAGCTCATCAATTCGCATTA
AAACATCATCTCCCAACTATTGCAGTTCTAGGTTTTGGTCATTTAAATCACTATCCAAAGGAAACCCGAAAGTTACGTAA
TATAATTGAAGAAACTGGTTTAGTCATAAGTGAATATCCTCCTTTAACAAAAATAAACAAATATCAATTCCCTGAAAGAA
ATCGTCTGATAAGCGGGTTGTCTCGTGGTGTATTAATTACTGAAGCTAAAATTAAAAGTGGTAGTCAAATTACAATAGAT
TGTGCTTTAGATCAAAATAGAAATGTTTATGTATTACCTGGATCAATGTTTAACCCTTTGACAAAAGGAAATTTATTACG
TGCTCAAGAAGGGGCAATGATTGTTTCAGAAGCAGAAGATATATTATATGATTATTGTTTTTTAAACGATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

53.979

99.655

0.538
  dprA Staphylococcus aureus N315

53.819

99.31

0.534
  dprA Streptococcus mutans UA159

36.77

100

0.369