Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   MUA26_RS07480 Genome accession   NZ_CP094717
Coordinates   1509582..1510211 (-) Length   209 a.a.
NCBI ID   WP_262603540.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6246     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1504582..1515211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA26_RS07450 (MUA26_07430) - 1504735..1505973 (-) 1239 WP_262613868.1 aminopeptidase -
  MUA26_RS07455 (MUA26_07435) - 1505988..1506194 (-) 207 WP_262605142.1 DUF1128 domain-containing protein -
  MUA26_RS07460 (MUA26_07440) - 1506427..1506888 (+) 462 WP_262603536.1 low molecular weight protein-tyrosine-phosphatase -
  MUA26_RS07465 (MUA26_07445) - 1506888..1507178 (+) 291 WP_262613870.1 YtxH domain-containing protein -
  MUA26_RS07470 (MUA26_07450) - 1507360..1508658 (+) 1299 WP_262613872.1 YihY/virulence factor BrkB family protein -
  MUA26_RS07475 (MUA26_07455) - 1508953..1509531 (+) 579 WP_262603539.1 carbonic anhydrase -
  MUA26_RS07480 (MUA26_07460) vraR 1509582..1510211 (-) 630 WP_262603540.1 response regulator transcription factor Regulator
  MUA26_RS07485 (MUA26_07465) vraS 1510201..1511244 (-) 1044 WP_262613874.1 sensor histidine kinase Regulator
  MUA26_RS07490 (MUA26_07470) liaF 1511241..1511945 (-) 705 WP_262613875.1 cell wall-active antibiotics response protein LiaF -
  MUA26_RS07495 (MUA26_07475) - 1511958..1512347 (-) 390 WP_262613876.1 hypothetical protein -
  MUA26_RS07500 (MUA26_07480) map 1512446..1513207 (-) 762 WP_262603544.1 type I methionyl aminopeptidase -
  MUA26_RS07505 (MUA26_07485) - 1513302..1514300 (+) 999 WP_262603545.1 aromatic acid exporter family protein -
  MUA26_RS07510 (MUA26_07490) - 1514370..1515095 (-) 726 WP_262603546.1 glutamine amidotransferase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23334.93 Da        Isoelectric Point: 4.8810

>NTDB_id=671111 MUA26_RS07480 WP_262603540.1 1509582..1510211(-) (vraR) [Staphylococcus sp. IVB6246]
MTIKVLFVDDHEMVRIGISSYLSTQPDIEVVGEGGSGREAIEKAHELKPDVILMDLVMTDMDGVEATAQIKKDLPAIKVV
MLTSYIEDKEVYRALDAGVDSYILKTTSASDIASAIRKTSQGESVFEAEVLVKMRNRMKQRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHGLIE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=671111 MUA26_RS07480 WP_262603540.1 1509582..1510211(-) (vraR) [Staphylococcus sp. IVB6246]
ATGACGATTAAAGTTTTGTTTGTAGACGATCATGAAATGGTTCGTATTGGTATTTCTAGTTATTTATCGACTCAGCCAGA
CATTGAAGTGGTCGGTGAGGGCGGTTCAGGTAGAGAAGCCATTGAAAAAGCACATGAATTAAAGCCTGATGTTATCTTGA
TGGACCTTGTGATGACAGATATGGATGGTGTGGAAGCGACAGCACAAATAAAAAAAGACCTACCAGCAATTAAAGTCGTA
ATGTTAACGAGCTACATAGAGGATAAAGAAGTCTATCGTGCCTTAGATGCGGGTGTGGATAGTTATATTCTTAAAACGAC
AAGTGCGAGTGATATTGCGTCTGCGATACGTAAGACAAGCCAAGGAGAGTCAGTATTTGAAGCGGAAGTCTTGGTTAAAA
TGCGTAACCGTATGAAGCAGCGTGCAGAATTATATGAGATGTTAACAGAAAGAGAGATGGAGATTCTTTTACTGATTGCA
AAAGGATACTCCAATCAAGAAATTGCGAGTGCCTCACATATTACGATTAAAACCGTTAAAACTCATGTGAGTAATATTTT
AAGTAAGTTGGAAGTACAAGACCGTACACAAGCGGTCATTTATGCTTTCCAACATGGTTTGATTGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

90.909

100

0.909
  degU Bacillus subtilis subsp. subtilis str. 168

35.714

100

0.383