Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MUA57_RS08025 Genome accession   NZ_CP094706
Coordinates   1720696..1721586 (-) Length   296 a.a.
NCBI ID   WP_262548305.1    Uniprot ID   -
Organism   Staphylococcus simulans strain IVB6193     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1715696..1726586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA57_RS08010 (MUA57_08005) xerC 1716084..1716974 (-) 891 WP_002480690.1 tyrosine recombinase XerC -
  MUA57_RS08015 (MUA57_08010) trmFO 1717096..1718403 (-) 1308 WP_002480689.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MUA57_RS08020 (MUA57_08015) topA 1718487..1720553 (-) 2067 WP_023015697.1 type I DNA topoisomerase -
  MUA57_RS08025 (MUA57_08020) dprA 1720696..1721586 (-) 891 WP_262548305.1 DNA-processing protein DprA Machinery gene
  MUA57_RS08030 (MUA57_08025) sucD 1721807..1722721 (-) 915 WP_262548306.1 succinate--CoA ligase subunit alpha -
  MUA57_RS08035 (MUA57_08030) sucC 1722742..1723908 (-) 1167 WP_002480685.1 ADP-forming succinate--CoA ligase subunit beta -
  MUA57_RS08040 (MUA57_08035) - 1724137..1724907 (-) 771 WP_107547691.1 ribonuclease HII -
  MUA57_RS08045 (MUA57_08040) ylqF 1724907..1725776 (-) 870 WP_262548307.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 296 a.a.        Molecular weight: 34110.21 Da        Isoelectric Point: 9.1718

>NTDB_id=670857 MUA57_RS08025 WP_262548305.1 1720696..1721586(-) (dprA) [Staphylococcus simulans strain IVB6193]
MNLKELDLELLRLRYAGYSTKQIYALLFRYPDYFELNLPERMTKLRQFSQNTASKTMLLHYQTYCQIEPNGIYQSLVSRN
IYLISIFHPDYPHLLKHIYAPPLLLFCKGNRTCLKAPHYLSVVGSREATKYTQNALEYLFKNEALHDLVIVSGFAKGGDA
FAHEAALHYNMATIGVLAFGHYHHYPKETRALRNRIEQTGLTLSEYIPTDRPARYKFPERNRIISGLSQGVLITESRERS
GAQITVDLALEQDRNVYVLPGSLFQKLTIGNLKRAQEGAKIVLRAQDIMEDYETLN

Nucleotide


Download         Length: 891 bp        

>NTDB_id=670857 MUA57_RS08025 WP_262548305.1 1720696..1721586(-) (dprA) [Staphylococcus simulans strain IVB6193]
TTGAACCTCAAAGAATTAGATTTAGAACTCCTCAGATTACGCTACGCAGGTTACTCCACAAAGCAAATATACGCACTTTT
ATTCAGGTATCCAGACTATTTTGAACTAAATTTACCAGAAAGAATGACAAAACTTCGACAATTTTCACAAAATACTGCCT
CTAAAACTATGCTTCTGCATTATCAAACATATTGTCAGATAGAGCCTAATGGTATTTATCAATCGTTGGTCTCTCGAAAC
ATCTACTTAATTTCCATTTTTCATCCTGATTATCCTCACTTACTTAAACATATTTATGCACCTCCATTATTATTATTTTG
TAAAGGCAATAGAACTTGCTTAAAAGCACCTCACTATTTAAGTGTCGTCGGTTCTAGAGAAGCGACAAAGTATACACAAA
ATGCATTAGAATACCTCTTTAAGAATGAAGCATTACATGATCTCGTTATCGTTTCAGGTTTTGCTAAAGGTGGAGATGCA
TTTGCACATGAAGCGGCTTTACACTATAATATGGCAACGATTGGCGTTTTAGCATTTGGTCATTATCATCATTATCCTAA
AGAAACGCGTGCATTACGAAATCGAATAGAACAAACAGGTTTAACCCTCTCAGAATATATCCCTACAGATAGACCTGCCA
GATATAAATTTCCGGAACGTAATCGTATCATTAGCGGCTTATCGCAAGGCGTACTGATTACTGAGTCTAGAGAAAGAAGC
GGCGCACAAATCACAGTAGATTTAGCTTTAGAACAAGACAGAAATGTTTATGTGTTGCCAGGTAGCTTATTTCAAAAATT
GACCATTGGAAATTTAAAACGCGCACAAGAAGGCGCGAAAATCGTTTTGAGAGCGCAAGATATTATGGAAGATTATGAAA
CATTAAATTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(79-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

51.22

96.959

0.497
  dprA Staphylococcus aureus MW2

51.22

96.959

0.497
  dprA Legionella pneumophila strain ERS1305867

37.374

100

0.375