Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   OIE49_RS14510 Genome accession   NZ_CP109090
Coordinates   3165886..3166488 (-) Length   200 a.a.
NCBI ID   WP_326802684.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01788     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3160886..3171488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE49_RS14485 (OIE49_14495) - 3161291..3161473 (-) 183 WP_326802679.1 DUF397 domain-containing protein -
  OIE49_RS14490 (OIE49_14500) - 3161470..3162288 (-) 819 WP_326802680.1 helix-turn-helix transcriptional regulator -
  OIE49_RS14495 (OIE49_14505) - 3162426..3162872 (+) 447 WP_326802681.1 ATP-binding protein -
  OIE49_RS14500 (OIE49_14510) - 3163209..3164897 (-) 1689 WP_326802682.1 transposase -
  OIE49_RS14505 (OIE49_14515) - 3165144..3165755 (-) 612 WP_326802683.1 hypothetical protein -
  OIE49_RS14510 (OIE49_14520) letA 3165886..3166488 (-) 603 WP_326802684.1 response regulator transcription factor Regulator
  OIE49_RS14515 (OIE49_14525) - 3166835..3168223 (+) 1389 WP_326802685.1 IS4 family transposase -
  OIE49_RS14520 (OIE49_14530) - 3168260..3168436 (-) 177 WP_326802686.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21022.27 Da        Isoelectric Point: 6.6483

>NTDB_id=670762 OIE49_RS14510 WP_326802684.1 3165886..3166488(-) (letA) [Streptomyces sp. NBC_01788]
MIKVLVVEDHAVVRSGLVALLSGELSIRVVGQAADGEAALAEAERLRPDVVLLDIDLPARDGIAVAAALAEQLPECRVLM
LTALDRPGHLGRALGAGASGYLLKSVTPAETADAIRRVAVGGRVIDPRMRDGGADTVSPLTERETEVLRLASSGAHAREI
AADLFLSLGTVRNRLSSAVGKLHARTLVDAVRIAERHGWL

Nucleotide


Download         Length: 603 bp        

>NTDB_id=670762 OIE49_RS14510 WP_326802684.1 3165886..3166488(-) (letA) [Streptomyces sp. NBC_01788]
GTGATCAAAGTGCTGGTGGTCGAGGACCACGCCGTCGTGCGGTCCGGGCTGGTGGCGTTGCTCTCGGGCGAGCTGAGTAT
ACGGGTCGTGGGTCAGGCCGCCGATGGTGAGGCCGCACTGGCCGAGGCCGAGCGGCTTCGGCCCGATGTGGTCCTCCTCG
ACATCGACCTGCCTGCCAGGGATGGCATCGCCGTTGCCGCAGCGCTCGCCGAACAGCTGCCGGAATGCCGCGTTCTGATG
CTCACGGCGCTGGACCGGCCCGGGCATCTGGGGCGTGCCTTGGGCGCCGGAGCGTCCGGCTACCTCCTCAAGTCCGTGAC
CCCCGCCGAGACCGCCGACGCGATTCGCAGGGTCGCCGTCGGTGGGCGCGTGATCGACCCGCGGATGCGGGACGGCGGGG
CCGACACGGTCAGCCCTCTGACCGAGCGGGAGACAGAGGTGCTGCGGCTGGCGTCCTCCGGCGCCCACGCCCGTGAGATC
GCCGCCGATCTCTTCCTGAGCCTGGGCACGGTACGCAACCGGCTCTCCTCCGCTGTCGGCAAGCTCCACGCGCGCACCCT
CGTCGACGCCGTCCGCATCGCCGAACGCCACGGTTGGCTGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(139-194)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

36.893

100

0.38
  letA Legionella pneumophila strain ERS1305867

36.893

100

0.38
  vraR Staphylococcus aureus N315

35.922

100

0.37