Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OIE49_RS12320 Genome accession   NZ_CP109090
Coordinates   2670949..2672106 (-) Length   385 a.a.
NCBI ID   WP_326806205.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01788     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2665949..2677106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE49_RS12310 (OIE49_12325) rcrP 2666936..2668669 (+) 1734 WP_100566956.1 ABC transporter ATP-binding protein Regulator
  OIE49_RS12315 (OIE49_12330) rcrQ 2668669..2670651 (+) 1983 WP_326802347.1 ABC transporter ATP-binding protein Regulator
  OIE49_RS12320 (OIE49_12335) rpoS 2670949..2672106 (-) 1158 WP_326806205.1 RNA polymerase sigma factor Regulator
  OIE49_RS12325 (OIE49_12340) dnaG 2672268..2674178 (-) 1911 WP_326802348.1 DNA primase -
  OIE49_RS12330 (OIE49_12345) - 2674218..2675483 (-) 1266 WP_326802349.1 FAD-dependent oxidoreductase -
  OIE49_RS12335 (OIE49_12350) - 2675709..2677094 (-) 1386 WP_326802350.1 deoxyguanosinetriphosphate triphosphohydrolase -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 42258.22 Da        Isoelectric Point: 4.9735

>NTDB_id=670756 OIE49_RS12320 WP_326806205.1 2670949..2672106(-) (rpoS) [Streptomyces sp. NBC_01788]
MPAAVLLAYGTDGGEAAADSAPSRTAAARSAAIILEVAPVQTQTLTQTDSPAGPGSAGPVPEADAEAPPELPDPVPARTE
SGGPSSDLFRQYLREIGRIPLLTAAEEVELARRVEAGLFAEEKLTTTPDLDSRLALDLDRIVVLGRMAKRRLIEANLRLV
VSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQ
RRMLQERGYEPATEEVAALLDLPPERVSEVLRLAQEPVSLHAPVGEEDEVALGDLIEDGDAASPVESAAFLLLREHLEAV
LSTLGERERKVVQLRYGLVDGRPRTLEEIGRIFGVTRERIRQIESKTLSKLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=670756 OIE49_RS12320 WP_326806205.1 2670949..2672106(-) (rpoS) [Streptomyces sp. NBC_01788]
ATCCCCGCGGCTGTGCTTCTCGCGTACGGGACGGACGGTGGCGAGGCCGCCGCCGACTCCGCCCCCTCTCGTACCGCTGC
CGCACGCTCAGCAGCGATCATCCTGGAGGTCGCCCCCGTGCAGACCCAGACCCTCACCCAGACCGACAGCCCCGCCGGAC
CGGGCAGCGCCGGGCCGGTCCCGGAGGCGGACGCGGAGGCCCCGCCCGAGCTTCCCGATCCGGTTCCCGCCCGTACCGAG
AGCGGCGGCCCCTCCTCCGACCTGTTCCGCCAGTACCTCCGGGAGATCGGCCGGATCCCGCTGCTCACCGCCGCGGAGGA
GGTCGAGCTGGCCCGGCGTGTGGAGGCCGGTCTGTTCGCGGAGGAGAAGCTGACCACCACCCCGGACCTGGACAGCCGGC
TCGCCCTGGACCTGGACCGGATCGTCGTGCTGGGCCGGATGGCCAAGCGCCGGCTCATCGAGGCGAACCTGCGGCTCGTG
GTGTCCGTGGCGAAGCGGTACGTCGGCCGGGGGCTCACGATGCTCGACCTCGTGCAGGAGGGCAACCTCGGGCTCATCCG
GGCCGTGGAGAAGTTCGACTACGCCCGCGGCTACAAGTTCTCCACCTACGCCACCTGGTGGATCCGCCAGGCCATGTCCC
GCGCCCTGGCCGACCAGGCCCGCACCATCCGCGTGCCCGTGCACGTCGTCGAACTCATCAACCGGGTCGTACGGGTGCAG
CGGCGGATGCTCCAGGAGCGGGGCTACGAGCCGGCCACCGAGGAGGTCGCCGCCCTCCTCGACCTGCCGCCCGAGCGGGT
GAGCGAGGTCCTGCGGCTCGCCCAGGAGCCGGTCTCCCTGCACGCCCCGGTCGGCGAGGAGGACGAGGTCGCCCTCGGTG
ACCTGATCGAGGACGGCGACGCCGCCTCGCCGGTGGAGTCGGCGGCGTTCCTGCTGCTGCGCGAGCACCTGGAGGCCGTG
CTGTCCACGCTGGGGGAACGCGAGCGCAAGGTCGTGCAGTTGCGGTACGGGCTCGTCGACGGGCGCCCGCGCACGCTGGA
GGAGATAGGGCGCATCTTCGGCGTGACCCGCGAGCGGATCCGCCAGATCGAGTCCAAGACCCTCAGCAAGCTGCGCGACC
ACGCCTTCGCCGACCAGCTCCGCGGCTATCTGGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(152-221)

Sigma-70, region 4 (Sigma70_r4)

(320-372)

Sigma-70 region 3 (Sigma70_r3)

(231-307)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(87-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.882

88.312

0.361