Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OIE49_RS12315 Genome accession   NZ_CP109090
Coordinates   2668669..2670651 (+) Length   660 a.a.
NCBI ID   WP_326802347.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01788     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2663669..2675651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE49_RS12280 (OIE49_12295) - 2663927..2664088 (+) 162 WP_199836493.1 hypothetical protein -
  OIE49_RS12300 (OIE49_12315) - 2664811..2665113 (+) 303 WP_100566958.1 hypothetical protein -
  OIE49_RS12305 (OIE49_12320) - 2665205..2666659 (+) 1455 WP_326802346.1 FGGY family carbohydrate kinase -
  OIE49_RS12310 (OIE49_12325) rcrP 2666936..2668669 (+) 1734 WP_100566956.1 ABC transporter ATP-binding protein Regulator
  OIE49_RS12315 (OIE49_12330) rcrQ 2668669..2670651 (+) 1983 WP_326802347.1 ABC transporter ATP-binding protein Regulator
  OIE49_RS12320 (OIE49_12335) rpoS 2670949..2672106 (-) 1158 WP_326806205.1 RNA polymerase sigma factor Regulator
  OIE49_RS12325 (OIE49_12340) dnaG 2672268..2674178 (-) 1911 WP_326802348.1 DNA primase -
  OIE49_RS12330 (OIE49_12345) - 2674218..2675483 (-) 1266 WP_326802349.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 71094.71 Da        Isoelectric Point: 6.4371

>NTDB_id=670755 OIE49_RS12315 WP_326802347.1 2668669..2670651(+) (rcrQ) [Streptomyces sp. NBC_01788]
MAGPMGRMMGGSGPDNRSLNFKESGKRLIAQFRPERVTVAALVLCVVVSVMLSVIGPKILGKATDLVFAGIVGRQMPAGA
TKGEVLASMRERGQGAIADMLRSTDFTPGKGIDFGAVGNVLLLALSTFLVAGLLMGVATRLVNRSVNRTVFRMREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLNQSMGQLINSLLTIIGVLVMMFYVSWILALVALVTVPLSFVVATRVGK
RSQPHFVQQWRSTGQLNAHIEEMYTGHTLVKVFGRQEESAKQFAEQNDALYEAGFKAQFNSGVMQPLMMFVSNINYVLVA
VVGGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFELLDAEEQTADPVPGVRPEELRGRVALE
HVSFRYDPEKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVTGGRITLDGIDIGKMSRDELRSGIGMVLQDT
WLFGGTIAENIAYGAGVEGGARSALGQGGGGRRVGEVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQL
ITIARAFLSDPVILVLDEATSSVDTRTEVLIQKAMAKLQHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHDELLGA
DGAYARLYKAQFAQAVAEVD

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=670755 OIE49_RS12315 WP_326802347.1 2668669..2670651(+) (rcrQ) [Streptomyces sp. NBC_01788]
ATGGCCGGGCCGATGGGGCGCATGATGGGCGGGTCCGGGCCCGACAACCGCTCGCTGAACTTCAAGGAGTCGGGCAAACG
GCTCATCGCCCAGTTCAGGCCCGAACGGGTCACCGTCGCCGCCCTGGTGCTGTGCGTGGTGGTGAGCGTCATGCTCAGCG
TGATCGGGCCGAAGATCCTCGGCAAGGCCACCGACCTGGTCTTCGCGGGGATCGTCGGCCGGCAGATGCCGGCCGGGGCG
ACCAAGGGCGAGGTCCTCGCCTCCATGCGCGAGCGTGGCCAGGGCGCGATCGCCGACATGCTGAGGAGCACCGACTTCAC
CCCCGGCAAGGGGATCGACTTCGGTGCCGTCGGCAATGTGCTGCTGCTCGCGCTGAGCACGTTCCTGGTGGCCGGCCTGC
TGATGGGCGTGGCGACGCGGCTGGTGAACCGGTCGGTGAACCGGACCGTGTTCCGGATGCGCGAGGACGTGCAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGCCAGCGCGGCGAGGTACTCTCCCGCGCCACCAACGACATCGACAA
CATCGGGCAGACGCTCAACCAGTCGATGGGCCAGCTCATCAACTCGCTGCTGACCATCATCGGCGTGCTCGTCATGATGT
TCTACGTCTCCTGGATCCTGGCGCTGGTCGCGCTGGTGACCGTGCCGCTGTCGTTCGTCGTCGCCACGCGCGTGGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGCTCGACGGGCCAGCTCAACGCGCACATCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGAAGCAGTTCGCCGAGCAGAACGACGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGCGTCATGCAGCCGCTGATGATGTTCGTGTCGAACATCAACTACGTGCTGGTGGCC
GTCGTCGGTGGTCTCCGGGTCGCCTCGGGCACGCTGTCCATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACCCAGGTGGCCTCGATGGCCAACCTGGTGCAGTCGGGCGTCGCCTCGGCCGAGCGCGTCTTCGAAC
TGCTGGACGCCGAGGAGCAGACGGCGGACCCGGTGCCGGGCGTGCGGCCGGAGGAGCTGCGCGGACGGGTCGCGCTGGAG
CACGTGTCGTTCCGCTACGACCCCGAGAAGCCGCTCATCGAGGACCTGTCCCTGACGGTGGAGCCCGGCCACACGGTCGC
GATCGTCGGCCCGACCGGCGCGGGCAAGACCACGCTGGTCAACCTGCTCATGCGGTTCTACGACGTCACCGGCGGGCGCA
TCACGCTCGACGGGATCGACATCGGGAAGATGTCGCGGGACGAACTGCGGTCCGGGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCCTACGGCGCTGGAGTGGAAGGGGGTGCGCGAAGCGCACTCGGTCA
GGGTGGTGGCGGGCGACGGGTGGGCGAGGTCACCCGCGGGGAGATCGAGGAGGCGGCGCGGGCCGCGCACGCCGACCGGT
TCGTGCGTACGCTGCCCGACGGCTACGACACCGTGATCGACGACGAGGGCTCCGGGGTGAGCGCCGGTGAGAAGCAGCTC
ATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTCGTCCTGGACGAGGCGACCAGCTCGGTCGACACCCGTAC
CGAAGTGCTGATCCAGAAGGCGATGGCCAAACTCCAGCACGGCAGGACATCGTTCGTCATCGCCCACCGGCTCTCCACGA
TCCGGGACGCGGACACGATCCTCGTCATGGAGAACGGCTCCATCGTCGAACAGGGCGCCCACGACGAGCTGCTGGGTGCG
GACGGGGCGTACGCGCGCCTGTACAAGGCGCAGTTCGCGCAGGCGGTCGCCGAGGTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-581)

ABC transporter transmembrane region (ABC_membrane)

(41-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.465

96.364

0.38