Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OIE49_RS12310 Genome accession   NZ_CP109090
Coordinates   2666936..2668669 (+) Length   577 a.a.
NCBI ID   WP_100566956.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01788     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2661936..2673669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE49_RS12275 (OIE49_12290) - 2663085..2663843 (+) 759 WP_326802345.1 ANTAR domain-containing protein -
  OIE49_RS12280 (OIE49_12295) - 2663927..2664088 (+) 162 WP_199836493.1 hypothetical protein -
  OIE49_RS12300 (OIE49_12315) - 2664811..2665113 (+) 303 WP_100566958.1 hypothetical protein -
  OIE49_RS12305 (OIE49_12320) - 2665205..2666659 (+) 1455 WP_326802346.1 FGGY family carbohydrate kinase -
  OIE49_RS12310 (OIE49_12325) rcrP 2666936..2668669 (+) 1734 WP_100566956.1 ABC transporter ATP-binding protein Regulator
  OIE49_RS12315 (OIE49_12330) rcrQ 2668669..2670651 (+) 1983 WP_326802347.1 ABC transporter ATP-binding protein Regulator
  OIE49_RS12320 (OIE49_12335) rpoS 2670949..2672106 (-) 1158 WP_326806205.1 RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62787.18 Da        Isoelectric Point: 7.0279

>NTDB_id=670754 OIE49_RS12310 WP_100566956.1 2666936..2668669(+) (rcrP) [Streptomyces sp. NBC_01788]
MLIRLLRTYLRPYKKPITLLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILTFGAVMIGISLAQVVCNIGAVYFGA
RTASALGRDVRAAVFDRVQSFSAREVGNFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGVVLALGLDVPLSAV
LVAVVPVLGICVTLIVRRLRPLFRSMQKRLDVVNRVLREQITGNRVIRAFVRDEYEKDRFRRANTDLTEMSLATGRLLAL
MFPMVMTVVNVSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTESSVVP
PVAPVTELRRHGHLEIRGAGFRYPGAEEPVLRAIDLVARPGEVTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVR
TVGPELLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWQALKVAQARDFVTGLEGGLDAPISQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETAEATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=670754 OIE49_RS12310 WP_100566956.1 2666936..2668669(+) (rcrP) [Streptomyces sp. NBC_01788]
GTGCTCATACGACTCCTGCGGACCTATCTGAGGCCCTACAAGAAACCCATAACCCTGCTGGTGCTGCTGCAATTCCTGCA
GACCTGCGCCACGCTCTACCTGCCCACGCTGAACGCCCACATCATCGACAACGGTGTGGTGAAGGGTGACACCGGTTACA
TCCTGACGTTCGGCGCCGTGATGATCGGCATCTCCCTTGCACAGGTCGTGTGCAACATCGGTGCCGTCTACTTCGGCGCC
CGCACCGCCTCGGCGCTCGGCCGGGACGTACGGGCGGCCGTCTTCGACCGCGTGCAGTCCTTCTCGGCCCGGGAGGTCGG
CAACTTCGGGGCGCCCTCCCTCATCACGCGGACGACGAACGACGTGCAGCAGGTCCAGATGCTGGTCCTGATGACGTTCA
CCCTGATGGTGTCGGCGCCCATCATGTGCGTGGGCGGTGTCGTCCTGGCCCTCGGCCTGGACGTGCCGCTGTCCGCGGTG
CTGGTCGCCGTCGTCCCCGTGCTCGGCATCTGCGTGACGCTGATCGTGCGCCGGCTGCGTCCGCTGTTCCGGTCCATGCA
GAAGCGCCTGGACGTGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCGTCCGCGACG
AGTACGAGAAGGACCGCTTCCGCAGGGCCAACACCGACCTGACGGAGATGTCGCTGGCCACCGGCCGGCTGCTCGCGCTG
ATGTTCCCGATGGTGATGACGGTGGTGAACGTGTCGTCCATCGCCGTGGTGTGGTTCGGCGCCCACCGCATCGACAGCGG
CGGGATGCAGATCGGCGACCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCGACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGACACCGAGTCCAGCGTCGTGCCG
CCCGTCGCGCCCGTGACCGAGCTGCGCCGCCACGGCCATCTGGAGATCCGCGGCGCGGGCTTCCGCTATCCGGGGGCCGA
GGAGCCCGTCCTGAGGGCCATCGACCTGGTCGCCCGCCCCGGCGAGGTGACCGCCGTCATCGGCTCGACCGGCAGCGGCA
AGTCCACCCTGCTCGGTCTGGTGCCCAGGCTGTTCGACGCGACCGACGGAGAGGTCCTCGTCGACGGCGTGGACGTGCGC
ACCGTGGGTCCGGAGCTGCTCGCCAGAACGGTCGGCCTGGTCCCGCAGAAGCCGTACCTGTTCGCCGGCACCGTCGCGAC
CAACCTGCGCTACGGCAACCCGGACGCCACCGACGAGGAGCTCTGGCAGGCGCTGAAGGTGGCACAGGCCAGGGACTTCG
TCACCGGTCTCGAGGGAGGCCTGGACGCGCCGATCTCGCAGGGCGGCACGAACGTCTCCGGCGGCCAGCGCCAGCGTCTG
GCCATCGCCCGCACCCTGGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCCCTCGACTACGCCACCGA
CGCGGCCCTGCGGGCGGCGCTGGGGCGCGAGACCGCCGAGGCGACCGTCGTCATCGTCGCCCAGCGCGTGGCCACCATCC
GCGACGCCGACCGGATCGTCGTCCTGGACGAGGGACGGGTCGTCGGCACCGGCCGCCACCACGAGCTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTCACGGAAGCGGAGGCAGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.623

100

0.4