Detailed information
Bioinformatically predicted
Overview
| Name | pilE | Type | Machinery gene |
| Locus tag | PA8380_RS31520 | Genome accession | NZ_AP014839 |
| Coordinates | 5283574..5284110 (-) | Length | 178 a.a. |
| NCBI ID | WP_025921208.1 | Uniprot ID | Q8KQ36 |
| Organism | Pseudomonas aeruginosa strain 8380 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5278574..5289110
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PA8380_RS24445 (PA8380_50240) | - | 5279149..5281404 (-) | 2256 | WP_003104913.1 | DUF1631 domain-containing protein | - |
| PA8380_RS24450 (PA8380_50250) | nadC | 5281690..5282538 (+) | 849 | WP_017148538.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| PA8380_RS31925 (PA8380_50270) | tfpZ | 5282772..5283509 (-) | 738 | WP_023110409.1 | TfpX/TfpZ family type IV pilin accessory protein | - |
| PA8380_RS31520 | pilE | 5283574..5284110 (-) | 537 | WP_025921208.1 | pilin | Machinery gene |
| PA8380_RS24460 (PA8380_50280) | pilB | 5284337..5286040 (+) | 1704 | WP_023100230.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PA8380_RS24465 (PA8380_50290) | pilC | 5286044..5287261 (+) | 1218 | WP_023103506.1 | type II secretion system F family protein | Machinery gene |
| PA8380_RS24470 (PA8380_50300) | pilD | 5287264..5288136 (+) | 873 | WP_017148550.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| PA8380_RS24475 (PA8380_50310) | coaE | 5288133..5288744 (+) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| PA8380_RS24480 (PA8380_50320) | yacG | 5288741..5288941 (+) | 201 | WP_017148551.1 | DNA gyrase inhibitor YacG | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 18322.83 Da Isoelectric Point: 4.9984
>NTDB_id=67055 PA8380_RS31520 WP_025921208.1 5283574..5284110(-) (pilE) [Pseudomonas aeruginosa strain 8380]
MKAQKGFTLIELMIVVAIIGILAAIALPAYQDYTVRTRVSEGLVLAEPAKLMISTDGSASTADLTRATTTWNQQSNNLGA
SSKYVTSVLMDAGNTGVITITYVADQVGLPTAGNTLILSPYINDGNTRTALATAVAAGTRGTIDWACTSASNATATAQGF
TGMAAGSVPQEFAPAQCR
MKAQKGFTLIELMIVVAIIGILAAIALPAYQDYTVRTRVSEGLVLAEPAKLMISTDGSASTADLTRATTTWNQQSNNLGA
SSKYVTSVLMDAGNTGVITITYVADQVGLPTAGNTLILSPYINDGNTRTALATAVAAGTRGTIDWACTSASNATATAQGF
TGMAAGSVPQEFAPAQCR
Nucleotide
Download Length: 537 bp
>NTDB_id=67055 PA8380_RS31520 WP_025921208.1 5283574..5284110(-) (pilE) [Pseudomonas aeruginosa strain 8380]
ATGAAAGCTCAAAAAGGCTTCACTTTGATCGAGCTGATGATCGTTGTAGCGATCATCGGTATTCTGGCTGCGATTGCTCT
GCCGGCCTATCAGGACTACACCGTTCGTACCCGTGTCAGTGAAGGTCTGGTTCTGGCTGAGCCCGCCAAACTGATGATCT
CCACGGATGGAAGTGCTTCTACTGCTGATCTGACTCGCGCAACCACTACTTGGAACCAGCAATCCAATAATCTGGGTGCA
TCCAGTAAGTACGTAACATCTGTTTTGATGGATGCTGGTAACACCGGTGTTATCACTATTACGTATGTCGCTGACCAAGT
GGGCTTGCCGACTGCCGGTAACACTCTGATTCTGTCTCCCTATATCAATGATGGTAACACTCGCACTGCTCTGGCGACTG
CAGTGGCTGCTGGCACTCGTGGCACCATTGATTGGGCTTGCACTTCGGCATCGAACGCGACTGCCACTGCTCAGGGTTTC
ACCGGCATGGCAGCTGGTAGTGTGCCGCAAGAGTTTGCTCCTGCTCAGTGCCGCTAA
ATGAAAGCTCAAAAAGGCTTCACTTTGATCGAGCTGATGATCGTTGTAGCGATCATCGGTATTCTGGCTGCGATTGCTCT
GCCGGCCTATCAGGACTACACCGTTCGTACCCGTGTCAGTGAAGGTCTGGTTCTGGCTGAGCCCGCCAAACTGATGATCT
CCACGGATGGAAGTGCTTCTACTGCTGATCTGACTCGCGCAACCACTACTTGGAACCAGCAATCCAATAATCTGGGTGCA
TCCAGTAAGTACGTAACATCTGTTTTGATGGATGCTGGTAACACCGGTGTTATCACTATTACGTATGTCGCTGACCAAGT
GGGCTTGCCGACTGCCGGTAACACTCTGATTCTGTCTCCCTATATCAATGATGGTAACACTCGCACTGCTCTGGCGACTG
CAGTGGCTGCTGGCACTCGTGGCACCATTGATTGGGCTTGCACTTCGGCATCGAACGCGACTGCCACTGCTCAGGGTTTC
ACCGGCATGGCAGCTGGTAGTGTGCCGCAAGAGTTTGCTCCTGCTCAGTGCCGCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
43.719 |
100 |
0.489 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
40.556 |
100 |
0.41 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
40.341 |
98.876 |
0.399 |
| pilA2 | Legionella pneumophila str. Paris |
39.773 |
98.876 |
0.393 |