Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ISX51_RS02530 Genome accession   NZ_CP094659
Coordinates   502730..503362 (+) Length   210 a.a.
NCBI ID   WP_004729651.1    Uniprot ID   A0AAN0LME0
Organism   Vibrio lentus strain ED252     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 497730..508362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISX51_RS02510 (ISX51_02510) - 499495..499965 (+) 471 WP_281053308.1 TIGR02444 family protein -
  ISX51_RS02515 (ISX51_02515) - 500242..501234 (+) 993 WP_281053309.1 hydrolase -
  ISX51_RS02520 (ISX51_02520) - 501329..501541 (+) 213 WP_010435208.1 YheU family protein -
  ISX51_RS02525 (ISX51_02525) - 501619..502488 (+) 870 WP_004729650.1 phosphoribulokinase -
  ISX51_RS02530 (ISX51_02530) crp 502730..503362 (+) 633 WP_004729651.1 cAMP-activated global transcriptional regulator CRP Regulator
  ISX51_RS02535 (ISX51_02535) - 503547..504338 (-) 792 WP_102279220.1 DUF1338 domain-containing protein -
  ISX51_RS02540 (ISX51_02540) astD 504597..506054 (-) 1458 WP_281053310.1 succinylglutamate-semialdehyde dehydrogenase -
  ISX51_RS02545 (ISX51_02545) astA 506094..507113 (-) 1020 WP_009848917.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23623.39 Da        Isoelectric Point: 7.4009

>NTDB_id=670465 ISX51_RS02530 WP_004729651.1 502730..503362(+) (crp) [Vibrio lentus strain ED252]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=670465 ISX51_RS02530 WP_004729651.1 502730..503362(+) (crp) [Vibrio lentus strain ED252]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
AAGTACTTTGATTCATGCTGGTGAAAAGGCAGAAACCTTGTACTACATCGTTAAAGGTTCTGTGGCTGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGCGACTTCATCGGTGAACTTGGACTTTTCGAAGAAGAC
CAAGAGCGTACTGCGTGGGTTCGTGCTAAATCTCCTTGTGAAGTAGCTGAAATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTGAACCCAGATATCCTGATGCGCCTTTCAGCGCAAATGGCAAACCGTCTACAAGTAACTAGCCAAAAGGTTGGTG
ACTTAGCGTTCCTTGACGTAACAGGTCGTATCGCTCAAACGCTACTTAACCTAGCGAAACAGCCAGATGCAATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGCCAGATCGTTGGTTGTTCTCGTGAGACCGTAGGTCGTAT
CTTGAAGATGCTTGAAGAGCAGAACCTAATTTCTGCACACGGTAAGACTATCGTGGTATACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467