Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   MMY79_RS18165 Genome accession   NZ_CP094657
Coordinates   3910920..3912338 (+) Length   472 a.a.
NCBI ID   WP_252610744.1    Uniprot ID   -
Organism   Acinetobacter sp. XS-4     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3905920..3917338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMY79_RS18145 (MMY79_18140) thrC 3906176..3907315 (+) 1140 WP_003654438.1 threonine synthase -
  MMY79_RS18150 (MMY79_18145) pbpG 3907423..3908469 (-) 1047 WP_252610740.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  MMY79_RS18155 (MMY79_18150) - 3908682..3909317 (+) 636 WP_003654436.1 response regulator -
  MMY79_RS18160 (MMY79_18155) pilS 3909328..3910896 (+) 1569 WP_252610742.1 PAS domain-containing sensor histidine kinase Regulator
  MMY79_RS18165 (MMY79_18160) pilR 3910920..3912338 (+) 1419 WP_252610744.1 sigma-54 dependent transcriptional regulator Regulator
  MMY79_RS18170 (MMY79_18165) - 3912342..3913526 (-) 1185 WP_016139519.1 S41 family peptidase -
  MMY79_RS18175 (MMY79_18170) gpmI 3913542..3915089 (-) 1548 WP_252610746.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  MMY79_RS18180 (MMY79_18175) lptG 3915216..3916286 (-) 1071 WP_252610748.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 52970.13 Da        Isoelectric Point: 6.1582

>NTDB_id=670446 MMY79_RS18165 WP_252610744.1 3910920..3912338(+) (pilR) [Acinetobacter sp. XS-4]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVKHVSQTYPHTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKPEHEFGETTLENDLLIGRSPPIQNLRIAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDIMLPPLRERGGDILL
LANHFIQKVCMEWEIPSKQLTTTGETYLLQQDFPGNVRELRNMIERAITLSDDEFIDLTHLAPLLRGSSVNSQITTQPVN
DTSTAITQARPKLPLEGLERYLENIEKDILLNALDMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTELGEEV

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=670446 MMY79_RS18165 WP_252610744.1 3910920..3912338(+) (pilR) [Acinetobacter sp. XS-4]
ATGGCAGAACAGCAACCACTAGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTTTTAATGCAAATGACTCTTGCACG
AATGGGGATTAAGACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTTACTCAGTTTCATTATGATGCATGCT
TAACCGATTTAAACCTACCCGATGGTAGCGGTTTAGAATTGGTTAAACACGTTTCTCAAACTTACCCACACACACCAATT
GCAGTTTTAACTGCATACGGCAATATGGATATTGCAATTGCAGCGTTAAAGGCGGGAGCTTTTGACTTTGTAAGTAAACC
TATTAACCAAATTCATTTAGATCAGTTATTAAAAAAAGCGCTAAATCAGCCAAAACCAGAGCATGAGTTTGGTGAAACCA
CTTTGGAAAATGATCTATTAATTGGACGTTCTCCGCCAATACAAAACTTACGTATTGCTATTAAAAAGATAGCCCGCTCT
CAAGCTCCTGTGTTTGTTACAGGCGAGTCTGGTACAGGTAAAGAAGTTGTTGCTAATCTTATTCACCGCTTGAGTAACCG
TAGCGAAGGTCCGTTTATTGCGATTAACTGTGGCGCGATTCCAACCGAGCTCATGGAAAGTGAACTTTTCGGGCATAAAA
AAGGCAGTTTCACTGGAGCGACCCAAGACAAACAAGGCCTTATTTTGTCTGCTCATGGCGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTACCATTAAGTATGCAGGTTAAATTGCTTCGGGCAGTGCAAGAAAAGAAAATTCGTCCAGTAGGTTCAGA
TCAGGAAATTGATGTTGATTTTCGAGTGATTAGCGCCAGCCACCAAGATTTAGATTTATTAGTTCGACAAGGTAAATTCC
GTCAGGACTTATTTTTCCGTATTCATGTGATGGATATCATGTTGCCACCACTGCGTGAACGCGGTGGCGATATTTTGCTA
TTAGCCAATCACTTTATTCAAAAGGTTTGTATGGAATGGGAAATTCCAAGCAAACAATTAACTACAACTGGTGAAACTTA
TTTATTACAGCAAGATTTTCCGGGTAATGTTCGTGAATTAAGAAATATGATTGAACGAGCTATTACCTTAAGTGATGATG
AATTTATTGATTTAACACACCTAGCACCTCTTCTCAGAGGCAGTAGCGTTAACTCTCAAATCACCACTCAACCAGTGAAT
GACACATCGACTGCGATTACTCAGGCCCGACCAAAATTACCACTGGAAGGCCTAGAACGCTACTTAGAAAATATCGAAAA
AGATATTCTGCTAAACGCACTAGATATGACTCATTGGAACCGAACCTTAGCAGCTAAAAAGCTAGGAATGACTTTTCGTT
CTTTACGCTATCGACTGAAAAAGTTTGGCTTAGATACAGAATTGGGAGAAGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(422-462)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

86.892

100

0.871
  pilR Pseudomonas aeruginosa PAK

50.437

97.034

0.489