Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG946_RS28920 Genome accession   NZ_CP109072
Coordinates   6550319..6551110 (-) Length   263 a.a.
NCBI ID   WP_326798901.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01808     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6545319..6556110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG946_RS28900 (OG946_28915) - 6545946..6546947 (+) 1002 WP_326798897.1 TAXI family TRAP transporter solute-binding subunit -
  OG946_RS28905 (OG946_28920) - 6546999..6547724 (-) 726 WP_326798898.1 class I SAM-dependent methyltransferase -
  OG946_RS28910 (OG946_28925) recA 6547975..6549114 (+) 1140 WP_326798899.1 recombinase RecA Machinery gene
  OG946_RS28915 (OG946_28930) recX 6549118..6549924 (+) 807 WP_326798900.1 recombination regulator RecX -
  OG946_RS28920 (OG946_28935) dinR/lexA 6550319..6551110 (-) 792 WP_326798901.1 transcriptional repressor LexA Regulator
  OG946_RS28925 (OG946_28940) nrdR 6551618..6552211 (+) 594 WP_326798902.1 transcriptional regulator NrdR -
  OG946_RS28930 (OG946_28945) - 6552360..6555242 (+) 2883 WP_326798903.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 28324.13 Da        Isoelectric Point: 6.9857

>NTDB_id=670445 OG946_RS28920 WP_326798901.1 6550319..6551110(-) (dinR/lexA) [Streptomyces sp. NBC_01808]
MTTTADTTAIAAHERPQQAAEPQLTPPPGDGREGEAQPPKRSMPGRPPGIRADSSGLTERQRRVIEVIRDSVQRRGYPPS
MREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGADTPTTQAATDTTGKPAASYVPLVGRIAAGGPILAEE
SVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVAVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNA
AYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 792 bp        

>NTDB_id=670445 OG946_RS28920 WP_326798901.1 6550319..6551110(-) (dinR/lexA) [Streptomyces sp. NBC_01808]
GTGACCACTACCGCAGACACCACAGCCATCGCCGCCCACGAACGGCCCCAGCAGGCAGCGGAGCCGCAGCTCACGCCGCC
TCCCGGGGACGGCCGTGAGGGCGAGGCACAGCCACCAAAGCGCTCCATGCCCGGGCGTCCGCCGGGCATCAGGGCCGACA
GCTCGGGCCTGACCGAGCGGCAGCGCCGGGTCATCGAGGTCATTCGCGACTCGGTGCAGCGTCGCGGCTACCCCCCGTCG
ATGCGCGAGATCGGCCAGGCCGTCGGCCTCTCGTCCACCTCGTCGGTCGCGCACCAGCTCATGGCCCTGGAGCGCAAGGG
CTTCCTGCGCCGGGACCCGCACCGGCCGCGGGCGTACGAGGTGCGCGGCGCGGACACGCCCACCACCCAGGCAGCCACCG
ACACCACGGGCAAGCCCGCCGCGTCGTACGTGCCGCTGGTCGGCCGGATCGCCGCCGGTGGTCCGATCCTCGCCGAGGAG
TCGGTCGAGGACGTGTTCCCGCTGCCGCGGCAGCTCGTCGGCGACGGCGAGCTGTTCGTGCTGAAGGTCGTCGGTGACTC
GATGATCGAGGCGGCGATCTGCGATGGCGACTGGGTCGCGGTGCGCCGCCAGCCGGTCGCCGAGAACGGCGACATCGTCG
CCGCGATGCTGGACGGCGAGGCCACGGTCAAGCGGTTCAAGCGCGAGGACGGCCACGTGTGGCTACTCCCGCACAACGCG
GCGTACCAGCCGATTCCGGGCGACGAGGCGACGATCCTCGGCAAGGTCGTCGCGGTCCTCCGCCGGGTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(55-118)

Peptidase S24-like (Peptidase_S24)

(145-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.009

80.989

0.373