Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   MMY79_RS18160 Genome accession   NZ_CP094657
Coordinates   3909328..3910896 (+) Length   522 a.a.
NCBI ID   WP_252610742.1    Uniprot ID   -
Organism   Acinetobacter sp. XS-4     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3904328..3915896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMY79_RS18140 (MMY79_18135) - 3904820..3906121 (+) 1302 WP_004795155.1 homoserine dehydrogenase -
  MMY79_RS18145 (MMY79_18140) thrC 3906176..3907315 (+) 1140 WP_003654438.1 threonine synthase -
  MMY79_RS18150 (MMY79_18145) pbpG 3907423..3908469 (-) 1047 WP_252610740.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  MMY79_RS18155 (MMY79_18150) - 3908682..3909317 (+) 636 WP_003654436.1 response regulator -
  MMY79_RS18160 (MMY79_18155) pilS 3909328..3910896 (+) 1569 WP_252610742.1 PAS domain-containing sensor histidine kinase Regulator
  MMY79_RS18165 (MMY79_18160) pilR 3910920..3912338 (+) 1419 WP_252610744.1 sigma-54 dependent transcriptional regulator Regulator
  MMY79_RS18170 (MMY79_18165) - 3912342..3913526 (-) 1185 WP_016139519.1 S41 family peptidase -
  MMY79_RS18175 (MMY79_18170) gpmI 3913542..3915089 (-) 1548 WP_252610746.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 58983.46 Da        Isoelectric Point: 6.1832

>NTDB_id=670445 MMY79_RS18160 WP_252610742.1 3909328..3910896(+) (pilS) [Acinetobacter sp. XS-4]
MQFPLNSSLSNTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDNSLQQPALYSYTLLGYSILSLLQLLCFKFVATQATKQ
LILFFVVDVICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAIIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPPQFASE
KYPLAKWHPDLFEILKFDNLQEGDRFIFESQLSAYSINIKVQHLVVPQQALTLLILQDAQHINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELFKDSDLEQQNTLRHMIGKQTKRIDSIVQDTLGLASSERTYPIQIGLNDFIKTLLDEDLLDAR
HSIQLKIPDSSLKLLFDEKQLRQVLINLVRNALRHNAPDSPHVLINIHSQTNKLYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRMECSIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=670445 MMY79_RS18160 WP_252610742.1 3909328..3910896(+) (pilS) [Acinetobacter sp. XS-4]
ATGCAATTTCCCTTAAACTCATCGTTGTCCAATACGATTTTTCGTTTGGGCACGTGGTATGGTTTATATCGTCTTATTAT
TGCGGTTAGCCTCAATATTATTTTGGTTTTAACCGATGCTCAAATCGACAATAGTCTACAACAACCCGCTTTATATTCTT
ACACACTACTTGGCTATTCCATATTAAGCCTTCTTCAGCTTTTGTGTTTTAAGTTTGTTGCAACTCAAGCCACAAAGCAG
CTTATTTTATTTTTTGTAGTTGATGTTATCTGTTTGAGTTTACTTACATTTTCTGTAGGCGAACCAAATCTGCAACTCAG
TTTGCTGTATGTGATTGCTATATTTACCTCGGCAATTTTACTCAGCGCAAGAATGTCTTTACTCATTACATTACTTGCGG
TCATTGCGATTATTTACCAACGTTTTGTTGGTAGTTTATTTGACTACAATAATCTAAATACGATTGGTAATAGTGCCTTA
TTGGCCTTCTTATTTTTTGTGGTGCATGGCATCGGACAAATTGCGGTTCAACGTTTTAAATTACTTGAAGCGCTGACTTT
CCACCAATCTATAGAACTCTATCAACTACAAAATATCAACCGCTATATCTTGGAACAAATTGAAGAAGGCTATCTAGTTC
TAGATGAAAACTATGACATTGTTTTAAGTAATCCAGCTGCCTGCTCTCTGTTAGGGATTCCTCCTCAATTTGCCAGTGAA
AAATACCCTTTAGCAAAATGGCACCCCGATTTATTTGAAATTCTTAAGTTTGATAACTTACAAGAAGGTGATCGATTTAT
TTTTGAGTCTCAGCTATCGGCTTATTCTATTAATATTAAAGTCCAACATCTTGTAGTACCGCAACAGGCATTGACGCTAC
TCATTTTACAAGATGCGCAACACATTAATCAGCAAGCTCAACAACTCAAACTTGCTGCCTTAGGGCAACTCTCAGCAAGT
ATTGCACATGAAATCCGTAATCCCCTAGCAGCAATTGTTCAGGCAAACGAATTATTTAAAGATAGTGATTTAGAACAGCA
AAATACTTTACGCCATATGATTGGTAAGCAAACAAAACGCATCGATAGTATTGTTCAAGATACCTTAGGGCTTGCTAGCA
GCGAAAGAACTTATCCAATCCAGATTGGACTAAACGACTTCATAAAGACACTATTAGATGAAGATCTATTAGATGCTAGA
CATTCTATACAGCTTAAAATTCCTGATTCATCCTTAAAATTATTATTTGACGAGAAACAACTCAGACAGGTGCTCATTAA
CCTTGTCAGAAATGCTTTACGCCATAATGCGCCCGATTCACCTCATGTTCTGATCAACATTCACTCACAAACAAATAAAC
TCTATATTGATGTGATCGATTACGGCGAAGGGGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGTTTCCGAATGGAATGCTCAATAATATATTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

PAS fold (PAS)

(203-253)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

91.954

100

0.92