Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   MP622_RS15555 Genome accession   NZ_CP094643
Coordinates   3298779..3299765 (+) Length   328 a.a.
NCBI ID   WP_243791714.1    Uniprot ID   -
Organism   Acinetobacter sp. PK01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3293779..3304765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP622_RS15530 (MP622_15530) rpoZ 3295502..3295783 (-) 282 WP_004978050.1 DNA-directed RNA polymerase subunit omega -
  MP622_RS15535 (MP622_15535) gmk 3295863..3296486 (-) 624 WP_016168687.1 guanylate kinase -
  MP622_RS15540 (MP622_15540) ispH 3296622..3297572 (+) 951 WP_044739679.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  MP622_RS15545 (MP622_15545) - 3297738..3298235 (+) 498 WP_044739678.1 GspH/FimT family pseudopilin -
  MP622_RS15550 (MP622_15550) pilV 3298235..3298777 (+) 543 WP_243791712.1 type IV pilus modification protein PilV Machinery gene
  MP622_RS15555 (MP622_15555) pilW 3298779..3299765 (+) 987 WP_243791714.1 PilW family protein Machinery gene
  MP622_RS15560 (MP622_15560) - 3299762..3300589 (+) 828 WP_243791715.1 hypothetical protein -
  MP622_RS15565 (MP622_15565) pilY1 3300607..3304461 (+) 3855 WP_243791717.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 35333.96 Da        Isoelectric Point: 6.4744

>NTDB_id=670339 MP622_RS15555 WP_243791714.1 3298779..3299765(+) (pilW) [Acinetobacter sp. PK01]
MNNNYVSMTKQQGFTLVELMVALVLGLLISAAAIQLFTGGLLSSRMQEASAELQNSGVFGLDYIAKDIRLANYANTTNPE
LNEQTSWGGVVLTARTATVTTANIPIPASTPFVSNGLLSHSQGDTLSTVTNEWRGLSNVNLTSDQLTIQFISPNAMINCE
GANVQAGDYVIQRYFVRRDPATATSGTDYGLACDANQPTAAGTTPVLPPTTINGFGDAGEIIIPRVDHFTVQLGVRNDLG
NLAYYTINQYRTLATTERAASRIPPRIISVKLGVLVRSMDNTNNSAIDLTKQIPILNQNVTLNNTTTKFARRVYTTNITL
RNGLGEAL

Nucleotide


Download         Length: 987 bp        

>NTDB_id=670339 MP622_RS15555 WP_243791714.1 3298779..3299765(+) (pilW) [Acinetobacter sp. PK01]
ATGAATAACAACTATGTTTCTATGACAAAACAACAAGGTTTTACCTTAGTTGAATTGATGGTAGCCCTAGTTTTGGGGTT
ATTGATTAGTGCTGCTGCAATTCAATTATTTACTGGGGGATTGCTGTCTTCTCGCATGCAAGAGGCAAGTGCAGAGTTAC
AAAATAGTGGTGTATTTGGTTTGGATTATATTGCCAAAGACATTCGATTAGCCAATTATGCTAACACGACCAATCCTGAA
CTAAATGAACAAACCTCATGGGGTGGGGTAGTCCTGACTGCAAGAACGGCTACAGTCACAACAGCGAATATTCCTATTCC
AGCTTCTACTCCATTTGTTTCAAATGGCTTATTAAGCCACAGTCAAGGCGACACCTTAAGTACTGTAACAAATGAATGGC
GTGGACTTTCGAATGTTAACCTTACTAGCGACCAGTTGACCATCCAATTCATTTCTCCAAATGCGATGATAAATTGCGAA
GGAGCAAATGTTCAAGCGGGTGACTATGTTATACAACGATATTTTGTTAGACGAGATCCTGCAACTGCTACCTCTGGTAC
AGACTATGGACTAGCGTGTGATGCAAATCAACCAACTGCTGCTGGAACAACACCAGTTTTGCCACCCACAACAATTAATG
GTTTTGGTGACGCGGGAGAAATTATTATTCCGCGTGTAGATCATTTTACAGTGCAATTGGGTGTAAGAAATGATTTGGGG
AACTTGGCATATTACACAATTAATCAATATCGGACACTTGCAACAACTGAACGTGCAGCATCTAGAATTCCACCACGTAT
TATCTCTGTAAAACTTGGGGTCTTGGTGCGATCAATGGACAATACTAATAATTCGGCTATTGATTTAACGAAGCAAATTC
CAATTTTGAATCAAAACGTTACGTTAAATAATACAACCACAAAATTTGCTCGTCGTGTATATACCACCAATATTACATTG
CGCAATGGTTTAGGAGAAGCACTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(198-322)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

52.353

100

0.543
  comB Acinetobacter baylyi ADP1

34.795

100

0.363