Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   MP622_RS15550 Genome accession   NZ_CP094643
Coordinates   3298235..3298777 (+) Length   180 a.a.
NCBI ID   WP_243791712.1    Uniprot ID   -
Organism   Acinetobacter sp. PK01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3293235..3303777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP622_RS15530 (MP622_15530) rpoZ 3295502..3295783 (-) 282 WP_004978050.1 DNA-directed RNA polymerase subunit omega -
  MP622_RS15535 (MP622_15535) gmk 3295863..3296486 (-) 624 WP_016168687.1 guanylate kinase -
  MP622_RS15540 (MP622_15540) ispH 3296622..3297572 (+) 951 WP_044739679.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  MP622_RS15545 (MP622_15545) - 3297738..3298235 (+) 498 WP_044739678.1 GspH/FimT family pseudopilin -
  MP622_RS15550 (MP622_15550) pilV 3298235..3298777 (+) 543 WP_243791712.1 type IV pilus modification protein PilV Machinery gene
  MP622_RS15555 (MP622_15555) pilW 3298779..3299765 (+) 987 WP_243791714.1 PilW family protein Machinery gene
  MP622_RS15560 (MP622_15560) - 3299762..3300589 (+) 828 WP_243791715.1 hypothetical protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 18957.77 Da        Isoelectric Point: 7.4603

>NTDB_id=670338 MP622_RS15550 WP_243791712.1 3298235..3298777(+) (pilV) [Acinetobacter sp. PK01]
MNYNKYQAGVGLMEVLVALLLLAIGVLGYVALQLRAIDASSEALTKSQGILILRGLAENIRANGAGQANYATAVRGYTSI
TATPTAPTPSCFNPSTLCTPAQMANYDAYNAAKSAFEIGMKITMAECPGVSSAPVRRQCLYAAWDNTTITATSSAADVSQ
CMSSNGIYVNTARCLMMEAY

Nucleotide


Download         Length: 543 bp        

>NTDB_id=670338 MP622_RS15550 WP_243791712.1 3298235..3298777(+) (pilV) [Acinetobacter sp. PK01]
ATGAACTACAATAAATATCAAGCTGGCGTAGGGCTTATGGAAGTGCTGGTTGCTTTATTGCTATTGGCAATTGGTGTACT
AGGCTATGTTGCCTTACAACTACGTGCAATTGATGCTTCATCTGAAGCTTTGACTAAATCTCAAGGGATATTAATTCTAA
GAGGTTTGGCTGAAAATATTCGCGCAAATGGTGCAGGTCAAGCTAATTATGCAACGGCTGTTCGGGGTTATACATCTATT
ACAGCAACTCCAACAGCCCCAACTCCATCTTGTTTCAATCCTTCAACATTATGTACTCCAGCGCAAATGGCGAATTACGA
TGCCTATAATGCAGCAAAGTCAGCATTTGAAATTGGGATGAAAATTACGATGGCGGAATGTCCAGGTGTTTCAAGTGCGC
CTGTTAGAAGACAATGCTTATATGCAGCATGGGATAATACAACTATAACAGCAACGTCATCTGCGGCTGATGTTAGTCAA
TGTATGTCATCTAATGGAATTTATGTAAATACTGCACGTTGTTTGATGATGGAGGCATATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

60.773

100

0.611
  pilV Acinetobacter baylyi ADP1

37.158

100

0.378