Detailed information    

insolico Bioinformatically predicted

Overview


Name   comA/comEC   Type   Machinery gene
Locus tag   MP622_RS09040 Genome accession   NZ_CP094643
Coordinates   1902119..1904527 (-) Length   802 a.a.
NCBI ID   WP_243790591.1    Uniprot ID   -
Organism   Acinetobacter sp. PK01     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1897119..1909527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP622_RS09015 (MP622_09015) purM 1897482..1898552 (+) 1071 WP_016165938.1 phosphoribosylformylglycinamidine cyclo-ligase -
  MP622_RS09020 (MP622_09020) purN 1898549..1899181 (+) 633 WP_044740142.1 phosphoribosylglycinamide formyltransferase -
  MP622_RS09025 (MP622_09025) - 1899234..1900034 (-) 801 WP_243793492.1 alpha/beta hydrolase -
  MP622_RS09030 (MP622_09030) sppA 1900025..1901050 (-) 1026 WP_016165935.1 signal peptide peptidase SppA -
  MP622_RS09035 (MP622_09035) - 1901182..1902129 (+) 948 WP_243790589.1 lysophospholipid acyltransferase family protein -
  MP622_RS09040 (MP622_09040) comA/comEC 1902119..1904527 (-) 2409 WP_243790591.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MP622_RS09045 (MP622_09045) lolD 1904614..1905297 (-) 684 WP_104440976.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  MP622_RS09050 (MP622_09050) - 1905290..1906525 (-) 1236 WP_243790592.1 lipoprotein-releasing ABC transporter permease subunit -
  MP622_RS09055 (MP622_09055) - 1906551..1907120 (+) 570 WP_016165930.1 PilZ domain-containing protein -
  MP622_RS09060 (MP622_09060) - 1907130..1908041 (-) 912 WP_243790594.1 EamA family transporter -
  MP622_RS09065 (MP622_09065) - 1908054..1908530 (-) 477 WP_016165928.1 YaiI/YqxD family protein -

Sequence


Protein


Download         Length: 802 a.a.        Molecular weight: 91553.91 Da        Isoelectric Point: 8.4406

>NTDB_id=670315 MP622_RS09040 WP_243790591.1 1902119..1904527(-) (comA/comEC) [Acinetobacter sp. PK01]
MMYYILVAWILGITGMGKVWALTGQTCALLAIVCLIFQCVLFKFPQLNLPSIRLIRLSLLCLLSFNLAYVYADSSLTQRL
SLRELTAKPAEVIVHVKSLNQLQSNHVQQQIVVLNNQKQPVKWLAYIHPSSDTSLELGQYYRLYGEVLPAHSYAIEGAFD
QEKWFLQQNIMAAFRVKKAEKLTEQQLYAMGFMSYLRQQNSIVAEIQLAIEQQRLKLRNTLQQQSLHHSGLLLALLTGDQ
SLLSPEVEALFNRMGLSHLLAISGPHVLIFAAMLCWMIHRLIIRFTPSWYLRYPKPYLLVIPFCMGVLLYTAFVGFEIPA
LRTLLTSCIVAVLILLRFKLQALQVLLLSAAILLFLDPFCILSAAFWLSYCACLVLLRIYQTIQQQPEQLMLTRYAQLKL
YIAILFESQWKIFLALLPLMLVFFQQVVWIAPFSNMLALPWLSLLVVPLSIIATLCLWVIPPLGTLLFKLNDLGVSFLLS
ILNTGDQIFGSTVQNIAMSWTVMFGLILGLIILFLPRGIVPKSWSVVCFLPIFILDESKHAFELQILDVGQGQAIFLQNH
NQQMMIDMGGHYDEQKFSVGQQLIRPFLNSRGISNLDQLVLTHLDQDHSGAYFSLRSTLPIQTIYSNEQVHVMPESQFNY
CHSGQVWQLEGVKIQVLSPKQQQLTEVTDNQNELSCVLYVQVQNAQPYANFLLMGDAGWEAEYQILKDYPDLKVDVLVLG
HHGSKNSSAYDFLKQLKPKIAIASAGFNNRYGHPSKLTLQRLNELKIPLYNTIDKGSIQFIQAQDQTIQLNFYRDRQRWL
NR

Nucleotide


Download         Length: 2409 bp        

>NTDB_id=670315 MP622_RS09040 WP_243790591.1 1902119..1904527(-) (comA/comEC) [Acinetobacter sp. PK01]
ATGATGTATTACATATTAGTCGCTTGGATTTTAGGTATCACGGGTATGGGAAAGGTTTGGGCACTGACAGGTCAAACTTG
TGCTCTATTGGCAATAGTATGTTTGATTTTTCAATGTGTTCTCTTTAAATTCCCACAACTCAATTTGCCATCGATTCGAT
TAATAAGGCTAAGTTTATTGTGTTTGCTGAGTTTTAATTTGGCTTACGTATACGCAGACAGTTCTTTAACACAACGTCTC
TCTTTACGTGAATTGACCGCGAAACCTGCTGAAGTGATTGTGCATGTAAAATCATTGAATCAACTTCAATCCAATCATGT
TCAACAACAGATTGTTGTACTGAATAATCAAAAGCAACCTGTAAAATGGTTAGCTTATATCCATCCATCATCGGACACTT
CGCTCGAATTGGGTCAATACTACCGATTGTATGGAGAGGTGTTACCAGCCCATAGTTATGCAATTGAAGGCGCATTTGAT
CAAGAAAAATGGTTTTTGCAGCAAAACATCATGGCTGCATTTCGAGTAAAAAAAGCAGAAAAGCTGACTGAACAACAACT
TTATGCTATGGGGTTCATGTCCTATTTAAGACAGCAGAACAGTATAGTTGCTGAAATACAGTTGGCCATTGAGCAACAAA
GATTAAAGTTGCGAAATACATTACAACAGCAATCCTTGCATCACTCAGGTTTACTTTTGGCGTTGTTAACAGGCGACCAA
AGTTTATTGAGCCCCGAAGTTGAAGCGTTATTTAATCGTATGGGACTCAGTCATTTATTGGCAATTTCTGGTCCCCATGT
TTTGATTTTTGCAGCAATGTTGTGTTGGATGATTCATCGGTTAATTATCCGTTTTACACCCAGTTGGTATTTACGTTATC
CCAAACCTTATTTATTGGTGATTCCATTTTGTATGGGAGTATTGCTCTATACGGCTTTTGTGGGGTTTGAAATTCCTGCA
TTAAGGACACTGTTAACCAGTTGTATTGTTGCTGTGCTGATTTTATTGAGATTCAAATTACAAGCCCTGCAAGTACTCCT
CCTCAGTGCTGCAATTCTACTATTTTTAGATCCCTTTTGTATTCTGTCCGCTGCCTTTTGGTTGTCTTATTGCGCCTGTT
TAGTGTTGCTACGAATTTATCAAACCATACAGCAGCAACCTGAGCAGTTGATGCTAACGCGTTATGCACAACTTAAGTTA
TACATTGCTATTTTATTTGAATCACAATGGAAAATATTTTTAGCGTTATTACCCTTGATGTTGGTTTTCTTTCAACAAGT
GGTCTGGATTGCACCATTCAGTAATATGCTGGCATTACCATGGTTAAGTCTGCTTGTTGTTCCATTAAGCATTATTGCGA
CCCTGTGTTTGTGGGTTATTCCTCCATTAGGAACTCTGTTATTTAAATTGAATGATCTAGGTGTGTCTTTTTTACTTTCA
ATTTTAAATACTGGTGATCAGATATTCGGTTCAACGGTACAAAATATTGCCATGAGCTGGACAGTGATGTTTGGGCTGAT
TTTGGGTTTGATTATTCTGTTTTTACCTCGGGGTATTGTGCCAAAAAGTTGGAGCGTTGTCTGCTTTTTACCGATTTTTA
TACTGGATGAATCAAAACATGCGTTTGAATTACAAATTTTAGATGTTGGGCAGGGGCAAGCTATTTTTTTACAAAACCAC
AATCAGCAGATGATGATTGATATGGGTGGTCATTATGATGAACAAAAATTTAGTGTAGGACAGCAACTCATTCGTCCTTT
TTTAAATAGTAGGGGAATATCTAATTTAGATCAGTTGGTATTGACTCACTTAGACCAAGATCATAGCGGCGCATACTTTT
CTTTACGTTCAACTTTGCCTATTCAAACAATTTACAGTAATGAGCAGGTACACGTCATGCCTGAGTCTCAATTCAATTAT
TGTCATTCAGGACAGGTATGGCAATTAGAGGGTGTCAAAATACAGGTATTATCACCAAAACAGCAGCAATTAACTGAAGT
TACTGATAATCAAAATGAGCTTTCTTGTGTGCTCTATGTTCAAGTGCAAAATGCCCAACCGTATGCCAACTTTTTACTTA
TGGGGGACGCAGGGTGGGAAGCAGAATATCAGATTTTGAAGGACTATCCAGATTTAAAAGTGGATGTTCTGGTATTGGGG
CATCATGGTAGTAAAAACAGTTCGGCTTATGATTTCTTAAAACAATTAAAACCCAAAATTGCGATTGCCTCTGCGGGATT
TAATAACCGTTATGGGCATCCAAGTAAACTGACTCTACAGCGTTTAAATGAACTTAAGATTCCGCTTTACAACACAATTG
ACAAGGGAAGTATTCAATTTATACAGGCACAGGATCAAACGATACAATTAAATTTTTATCGTGATCGGCAGCGTTGGCTT
AATCGCTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Acinetobacter baumannii D1279779

47.362

100

0.481

  comA/comEC Acinetobacter baylyi ADP1

47.407

100

0.479

  comA/comEC Acinetobacter baumannii strain A118

46.503

100

0.473