Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   MP622_RS00260 Genome accession   NZ_CP094643
Coordinates   57996..58364 (+) Length   122 a.a.
NCBI ID   WP_044738969.1    Uniprot ID   -
Organism   Acinetobacter sp. PK01     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 52996..63364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP622_RS00245 (MP622_00245) rlmD 53377..54768 (+) 1392 WP_243791937.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  MP622_RS00250 (MP622_00250) - 54798..57104 (+) 2307 WP_044738971.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  MP622_RS00255 (MP622_00255) mazG 57180..57935 (+) 756 WP_243791939.1 nucleoside triphosphate pyrophosphohydrolase -
  MP622_RS00260 (MP622_00260) comEA 57996..58364 (+) 369 WP_044738969.1 ComEA family DNA-binding protein Machinery gene
  MP622_RS00265 (MP622_00265) pcnB 58498..59946 (+) 1449 WP_243791941.1 polynucleotide adenylyltransferase PcnB -
  MP622_RS00270 (MP622_00270) folK 59943..60431 (+) 489 WP_243791943.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  MP622_RS00275 (MP622_00275) panB 60474..61283 (+) 810 WP_016166139.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  MP622_RS00280 (MP622_00280) panC 61285..62133 (+) 849 WP_044738965.1 pantoate--beta-alanine ligase -
  MP622_RS00285 (MP622_00285) rapZ 62155..63006 (+) 852 WP_016166137.1 RNase adapter RapZ -
  MP622_RS00290 (MP622_00290) - 63003..63272 (+) 270 WP_016166136.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 13793.67 Da        Isoelectric Point: 10.2490

>NTDB_id=670305 MP622_RS00260 WP_044738969.1 57996..58364(+) (comEA) [Acinetobacter sp. PK01]
MVVLLTLTIFGFDHVNAQNFDQEYLNWKAKQQAQDARLGSSRTDGNYYLSKPSLNTVSGNKIRLNSATSEQLQQLSGIGE
KKAEAILQYRQQHGKFKTVDELQQVKGIGPKLLQKNKDRLTL

Nucleotide


Download         Length: 369 bp        

>NTDB_id=670305 MP622_RS00260 WP_044738969.1 57996..58364(+) (comEA) [Acinetobacter sp. PK01]
ATGGTGGTGTTGTTGACATTGACGATTTTTGGATTCGATCATGTAAATGCACAAAACTTTGATCAAGAATACTTGAACTG
GAAAGCAAAACAGCAAGCACAAGATGCTCGGCTTGGTTCATCACGCACAGATGGAAACTATTATCTTTCAAAACCCAGTT
TAAATACGGTATCAGGCAATAAAATACGTTTGAACAGTGCAACATCAGAACAATTACAGCAACTTTCAGGTATCGGTGAG
AAAAAAGCTGAAGCGATTTTACAATATCGACAACAACACGGAAAGTTCAAAACTGTGGATGAATTACAGCAGGTTAAAGG
CATTGGACCGAAGCTCTTACAGAAAAACAAAGATCGATTAACTCTTTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(57-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baylyi ADP1

55.172

95.082

0.525
  comEA Acinetobacter baumannii strain A118

44.8

100

0.459
  comEA Acinetobacter baumannii D1279779

43.2

100

0.443