Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   MTO68_RS21425 Genome accession   NZ_CP094620
Coordinates   4534491..4535021 (-) Length   176 a.a.
NCBI ID   WP_096735283.1    Uniprot ID   -
Organism   Acinetobacter sp. NyZ410     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4529491..4540021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTO68_RS21405 (MTO68_21405) - 4529721..4530584 (-) 864 WP_004816673.1 hypothetical protein -
  MTO68_RS21410 (MTO68_21410) aroB 4530601..4531680 (-) 1080 WP_244014284.1 3-dehydroquinate synthase -
  MTO68_RS21415 (MTO68_21415) aroK 4531717..4532259 (-) 543 WP_004725433.1 shikimate kinase AroK -
  MTO68_RS21420 (MTO68_21420) pilQ 4532296..4534470 (-) 2175 WP_244014286.1 type IV pilus secretin PilQ family protein Machinery gene
  MTO68_RS21425 (MTO68_21425) pilP 4534491..4535021 (-) 531 WP_096735283.1 pilus assembly protein PilP Machinery gene
  MTO68_RS21430 (MTO68_21430) comO 4535018..4535767 (-) 750 WP_004816666.1 type 4a pilus biogenesis protein PilO Machinery gene
  MTO68_RS21435 (MTO68_21435) pilN 4535764..4536405 (-) 642 WP_004816663.1 PilN domain-containing protein Machinery gene
  MTO68_RS21440 (MTO68_21440) comM 4536405..4537463 (-) 1059 WP_244014288.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19438.48 Da        Isoelectric Point: 5.2386

>NTDB_id=670244 MTO68_RS21425 WP_096735283.1 4534491..4535021(-) (pilP) [Acinetobacter sp. NyZ410]
MNQLSKIVCGISFAMLLVGCDSRIDAVNQEMANIRNQQPLPIEPAPVFNPVPSFNYSAQQLRSPFLPSSLANELKIMSGK
RVYPNFSRQPQPLESYPLESLTLKGSMKGAVGQTVGLIQTPDGEIERVQLGNYMGMNQGRIIEITPTRIDLLEIVPDGRD
GYIERPRSLVLIGPID

Nucleotide


Download         Length: 531 bp        

>NTDB_id=670244 MTO68_RS21425 WP_096735283.1 4534491..4535021(-) (pilP) [Acinetobacter sp. NyZ410]
ATGAACCAGCTCAGTAAAATAGTTTGTGGAATCTCTTTTGCAATGCTGTTGGTGGGGTGCGATTCTCGTATTGATGCCGT
TAACCAAGAAATGGCAAATATTAGAAATCAGCAACCATTGCCGATTGAACCTGCACCAGTATTTAATCCTGTACCAAGCT
TTAATTATTCAGCTCAACAATTACGCAGCCCATTTTTGCCAAGCTCATTGGCAAATGAATTGAAAATCATGTCAGGCAAG
CGTGTCTACCCGAATTTTTCAAGACAACCACAGCCGCTTGAAAGCTATCCTTTAGAATCGTTAACACTGAAAGGAAGTAT
GAAAGGAGCTGTTGGGCAAACAGTGGGGTTGATTCAAACACCTGATGGTGAGATTGAGCGGGTACAACTTGGCAACTACA
TGGGTATGAATCAAGGGCGAATTATTGAAATTACGCCGACCCGTATTGATTTATTGGAAATTGTTCCAGATGGTCGAGAC
GGTTATATAGAAAGACCACGGAGTCTAGTCCTAATCGGTCCAATAGATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(28-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

73.256

97.727

0.716
  comL Acinetobacter baylyi ADP1

79.114

89.773

0.71