Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   MTO68_RS21420 Genome accession   NZ_CP094620
Coordinates   4532296..4534470 (-) Length   724 a.a.
NCBI ID   WP_244014286.1    Uniprot ID   -
Organism   Acinetobacter sp. NyZ410     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4527296..4539470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTO68_RS21405 (MTO68_21405) - 4529721..4530584 (-) 864 WP_004816673.1 hypothetical protein -
  MTO68_RS21410 (MTO68_21410) aroB 4530601..4531680 (-) 1080 WP_244014284.1 3-dehydroquinate synthase -
  MTO68_RS21415 (MTO68_21415) aroK 4531717..4532259 (-) 543 WP_004725433.1 shikimate kinase AroK -
  MTO68_RS21420 (MTO68_21420) pilQ 4532296..4534470 (-) 2175 WP_244014286.1 type IV pilus secretin PilQ family protein Machinery gene
  MTO68_RS21425 (MTO68_21425) pilP 4534491..4535021 (-) 531 WP_096735283.1 pilus assembly protein PilP Machinery gene
  MTO68_RS21430 (MTO68_21430) comO 4535018..4535767 (-) 750 WP_004816666.1 type 4a pilus biogenesis protein PilO Machinery gene
  MTO68_RS21435 (MTO68_21435) pilN 4535764..4536405 (-) 642 WP_004816663.1 PilN domain-containing protein Machinery gene
  MTO68_RS21440 (MTO68_21440) comM 4536405..4537463 (-) 1059 WP_244014288.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 724 a.a.        Molecular weight: 78741.32 Da        Isoelectric Point: 8.8059

>NTDB_id=670243 MTO68_RS21420 WP_244014286.1 4532296..4534470(-) (pilQ) [Acinetobacter sp. NyZ410]
MKKSLKNIFNGDGKFMNSQLRQFTMAAVSIAIMQVAAAQTTMTNIVPMKISGQGTEIRVMFNGLPPQPQAYQLDNPSRLI
LDFDQAKQTINQSSIAVASEEASTVDIAADDQRSRLTVNLKNSGSFTTRVEGNTFILKINNANQAAALPTYAASASTQNK
QNQGIADIGFQRGNAGEGQVIVNLSGANTPVDVQQQGSKVVIRTLGNKIPAHLIRRLNVNDFATPVSSVDAYNDGSNGVI
TIQSSGSYEYMAFQAENKLTVSLKRPVENKVNRPNVSQSYTGKKISLDFQDIEVRRVLQLLADFTSINMVAADSVQGNIT
LRLKDVPWDQALDIILKTKNLDKRRNGSVIWIAPVTELIKAEEDEAKAIAQSVKLAPIQTEYIQLNYAKVAEVLKLLQDS
RNPKGAQANNTNNTDSLALESLLSLRGSAVADTRTNTLIINDTANNIDKIRKMIDLLDISVKQVMVEARIVRATTDFTKE
MGVKWGILSQGITKNNDLLVGGSDQTLWDLKNPDSNGKYTITRPDNLNVDLGVTTAGASKIAFGLISMSDFMLDLELSAL
QADGYGEVISTPKVMTADKQKAKVASGQQIPYQSTQTAGGSAVATTEFKDALLSLDVTPSITPEGKVQMQLNVTSDSAGQ
IVNGNVAINKNEINTNVLVDDGETVVLGGIFEQETKNSQTKVPFLGDIPYLGRLFRKDVKSDNKRELLIFVTPRIVNDSR
TRNH

Nucleotide


Download         Length: 2175 bp        

>NTDB_id=670243 MTO68_RS21420 WP_244014286.1 4532296..4534470(-) (pilQ) [Acinetobacter sp. NyZ410]
ATGAAAAAGAGTTTGAAAAATATCTTTAACGGGGATGGTAAGTTTATGAATAGTCAACTTCGTCAATTTACTATGGCGGC
AGTGTCAATTGCGATTATGCAGGTTGCAGCAGCGCAAACAACCATGACCAATATTGTACCGATGAAAATATCGGGGCAAG
GTACAGAAATTCGTGTGATGTTTAATGGCTTACCGCCACAGCCTCAAGCCTATCAATTGGATAATCCATCGCGACTGATT
TTAGACTTTGATCAGGCGAAGCAAACGATCAATCAATCATCCATTGCTGTGGCGAGTGAAGAAGCGTCGACTGTAGATAT
TGCGGCCGATGATCAACGTTCACGCTTAACAGTAAATTTAAAAAATAGTGGTTCTTTTACAACGCGTGTTGAAGGGAATA
CCTTTATTTTAAAGATTAACAATGCCAATCAAGCTGCTGCTTTACCGACTTATGCAGCATCTGCATCTACACAGAATAAG
CAAAATCAAGGCATCGCAGATATCGGTTTTCAGCGTGGCAATGCGGGTGAGGGGCAGGTTATTGTAAATCTGTCTGGTGC
AAATACACCTGTAGATGTGCAACAACAGGGCAGTAAAGTTGTTATTCGAACCTTAGGGAATAAAATTCCAGCACATTTAA
TTCGTCGTTTAAATGTTAATGATTTTGCGACCCCAGTTTCTTCTGTGGATGCTTATAATGATGGTTCCAATGGCGTAATC
ACCATTCAATCTTCGGGGAGCTATGAATATATGGCTTTCCAAGCGGAAAATAAATTGACCGTGAGTTTAAAGCGCCCTGT
AGAAAATAAAGTAAATCGTCCCAATGTGAGTCAATCTTATACCGGTAAGAAAATCTCACTGGATTTTCAAGATATTGAAG
TACGCCGTGTACTACAGCTGCTTGCTGATTTTACCAGTATTAATATGGTGGCTGCGGATTCAGTTCAAGGTAATATAACT
TTACGTTTAAAAGATGTACCTTGGGATCAGGCCTTAGATATTATTTTAAAAACCAAAAATTTAGATAAGCGCCGTAATGG
GAGTGTGATTTGGATTGCGCCTGTCACCGAGCTGATTAAAGCAGAAGAAGATGAAGCCAAAGCAATTGCACAAAGTGTAA
AATTAGCACCAATTCAAACTGAATATATTCAGCTTAATTATGCAAAAGTTGCAGAAGTTCTTAAATTGTTACAGGACTCT
AGAAACCCTAAAGGTGCGCAGGCGAATAATACCAATAATACAGATTCTTTAGCTTTAGAAAGTCTACTGAGCTTAAGAGG
AAGTGCGGTTGCAGATACAAGAACAAATACATTAATTATTAATGATACTGCAAATAATATTGATAAAATCCGTAAAATGA
TTGATCTATTGGATATTTCGGTAAAACAAGTCATGGTTGAAGCACGTATTGTTCGTGCTACGACAGATTTTACCAAAGAA
ATGGGGGTAAAGTGGGGCATTTTATCTCAAGGGATTACCAAGAATAATGATTTGCTGGTTGGTGGAAGTGATCAAACACT
TTGGGATTTAAAAAACCCAGATAGTAATGGCAAATATACCATTACTCGCCCTGATAATTTAAATGTCGATCTTGGTGTGA
CGACTGCGGGTGCAAGTAAGATTGCATTTGGTTTAATTAGTATGTCTGATTTTATGTTAGACCTAGAATTATCTGCATTA
CAAGCCGATGGTTATGGGGAAGTGATTTCAACACCAAAAGTAATGACTGCAGATAAACAAAAAGCCAAAGTTGCTTCGGG
TCAACAAATTCCATATCAGTCAACGCAAACGGCAGGAGGCAGTGCCGTTGCAACAACTGAATTTAAAGATGCTTTGCTCA
GTTTGGATGTTACACCAAGCATTACTCCAGAAGGGAAAGTACAAATGCAGCTAAATGTCACAAGTGACTCAGCTGGCCAA
ATAGTGAATGGAAATGTGGCGATTAACAAGAATGAAATCAATACCAATGTCTTAGTCGATGATGGAGAAACCGTGGTATT
AGGTGGCATTTTTGAACAAGAAACTAAAAACAGTCAGACCAAAGTTCCATTTTTAGGTGATATTCCTTATTTAGGACGAT
TATTTAGAAAGGATGTAAAGTCTGATAATAAACGAGAGTTACTAATCTTTGTGACACCAAGAATTGTTAATGACAGTCGT
ACCAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(381-463)

Secretin and TonB N terminus short domain (STN)

(312-354)

AMIN domain (AMIN)

(54-137)

Bacterial type II and III secretion system protein (Secretin)

(559-716)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

72.665

100

0.731
  pilQ Acinetobacter baumannii strain A118

72.665

100

0.731
  comQ Acinetobacter baylyi ADP1

69.972

98.895

0.692
  pilQ Pseudomonas aeruginosa PAK

39.672

100

0.401