Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MTO68_RS21440 Genome accession   NZ_CP094620
Coordinates   4536405..4537463 (-) Length   352 a.a.
NCBI ID   WP_244014288.1    Uniprot ID   -
Organism   Acinetobacter sp. NyZ410     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4531405..4542463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTO68_RS21415 (MTO68_21415) aroK 4531717..4532259 (-) 543 WP_004725433.1 shikimate kinase AroK -
  MTO68_RS21420 (MTO68_21420) pilQ 4532296..4534470 (-) 2175 WP_244014286.1 type IV pilus secretin PilQ family protein Machinery gene
  MTO68_RS21425 (MTO68_21425) pilP 4534491..4535021 (-) 531 WP_096735283.1 pilus assembly protein PilP Machinery gene
  MTO68_RS21430 (MTO68_21430) comO 4535018..4535767 (-) 750 WP_004816666.1 type 4a pilus biogenesis protein PilO Machinery gene
  MTO68_RS21435 (MTO68_21435) pilN 4535764..4536405 (-) 642 WP_004816663.1 PilN domain-containing protein Machinery gene
  MTO68_RS21440 (MTO68_21440) comM 4536405..4537463 (-) 1059 WP_244014288.1 pilus assembly protein PilM Machinery gene
  MTO68_RS21445 (MTO68_21445) ponA 4537627..4540167 (+) 2541 WP_244014289.1 penicillin-binding protein PBP1a -
  MTO68_RS21450 (MTO68_21450) - 4540494..4541297 (-) 804 WP_244014291.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38989.68 Da        Isoelectric Point: 4.5366

>NTDB_id=670247 MTO68_RS21440 WP_244014288.1 4536405..4537463(-) (comM) [Acinetobacter sp. NyZ410]
MLRLYRKPNKGLIGVDISSTTVKILELSVKNGRYWVESYGLSPLLDGSVVEKNILNPEAVADALERAVNIGNPQSQNVAV
AVPTSMVIHKIIEMDADMSDEEREVQIRMDAEQYIPFPLDEVSLDFEVLKDKLANPNRVNVLLVATRAENIDSRVEVLEI
GGLSPKIADVESYAIERAFDVFSDTLPIGVNLVGILDIGHTMTTLSVMQNGKIIYTREQVFGGKQLTQDVQNRYGLSYDE
AGRAKKDRTLPDDFETEVLMPFLEAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFL
QMGFSPQIDLKKIENDAPSLMVACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=670247 MTO68_RS21440 WP_244014288.1 4536405..4537463(-) (comM) [Acinetobacter sp. NyZ410]
GTGCTTAGACTATATCGTAAGCCAAATAAGGGGTTAATAGGAGTAGATATTAGTTCTACTACTGTAAAGATTTTAGAGCT
CTCTGTTAAGAACGGTCGTTACTGGGTTGAAAGTTATGGATTAAGTCCACTGCTGGATGGGAGTGTTGTTGAGAAAAACA
TTCTTAATCCTGAAGCAGTTGCTGATGCGTTGGAAAGAGCAGTCAATATTGGCAATCCTCAATCGCAAAATGTCGCGGTT
GCTGTACCTACATCTATGGTGATTCACAAAATCATCGAAATGGATGCAGATATGTCAGATGAGGAAAGAGAAGTTCAGAT
TCGAATGGATGCTGAACAATATATCCCTTTCCCACTGGATGAAGTCAGTCTAGATTTTGAAGTGTTAAAAGATAAGCTGG
CAAATCCAAATCGAGTCAATGTGTTACTTGTTGCAACACGTGCAGAGAATATCGATTCTCGTGTTGAAGTTTTAGAAATC
GGGGGCTTATCACCTAAAATCGCAGATGTAGAAAGTTATGCAATTGAGCGTGCTTTTGATGTCTTTTCCGATACCTTGCC
AATTGGTGTAAATCTTGTGGGTATCCTAGATATTGGTCATACCATGACCACTTTGTCTGTGATGCAAAATGGCAAGATCA
TTTATACCCGAGAGCAAGTTTTTGGTGGCAAGCAGCTGACTCAAGATGTACAGAACCGTTATGGTTTGTCTTATGACGAA
GCTGGTCGTGCCAAAAAAGATCGGACTTTACCTGATGATTTTGAAACAGAAGTCTTGATGCCGTTTTTAGAAGCAGTTGT
ACAACAAGCTGCTCGTTCATTACAGTTCTTCTTTTCATCTTCTCAGTTTAACGAGATCGACCATATTCTATTGGCGGGTG
GTAATGCCAATATTCCTGGTTTGGCAAAATTATTACAACAAAAACTCGGTTATCGCGTCACGATTGCAAATCCTTTCTTA
CAAATGGGGTTTTCACCACAAATTGACTTAAAAAAAATAGAAAATGATGCACCTTCTTTAATGGTTGCATGTGGTTTGGC
TTTGAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

84.091

100

0.841
  pilM Acinetobacter baumannii D1279779

83.807

100

0.838
  comM Acinetobacter baylyi ADP1

80.966

100

0.81
  pilM Legionella pneumophila strain ERS1305867

42.254

100

0.426