Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG440_RS21450 Genome accession   NZ_CP109046
Coordinates   4874128..4875126 (+) Length   332 a.a.
NCBI ID   WP_406008409.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00637 strain NBC 00637     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4869128..4880126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG440_RS21425 (OG440_21465) - 4869298..4869945 (+) 648 WP_406008404.1 TetR/AcrR family transcriptional regulator -
  OG440_RS21430 (OG440_21470) - 4870197..4871735 (+) 1539 WP_406008405.1 MFS transporter -
  OG440_RS21435 (OG440_21475) - 4871749..4872258 (-) 510 WP_406008406.1 MarR family winged helix-turn-helix transcriptional regulator -
  OG440_RS21440 (OG440_21480) - 4872476..4873285 (+) 810 WP_406008407.1 dioxygenase -
  OG440_RS21445 (OG440_21485) - 4873401..4873940 (-) 540 WP_406008408.1 GNAT family N-acetyltransferase -
  OG440_RS21450 (OG440_21490) rpoS 4874128..4875126 (+) 999 WP_406008409.1 RNA polymerase sigma factor RpoD/SigA Regulator
  OG440_RS21455 (OG440_21495) - 4876009..4876809 (+) 801 WP_406011418.1 TetR/AcrR family transcriptional regulator -
  OG440_RS21460 (OG440_21500) - 4876979..4878067 (-) 1089 WP_406008410.1 helix-turn-helix transcriptional regulator -
  OG440_RS21465 (OG440_21505) - 4878130..4879713 (+) 1584 WP_406008411.1 MFS transporter -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37290.00 Da        Isoelectric Point: 4.9067

>NTDB_id=670247 OG440_RS21450 WP_406008409.1 4874128..4875126(+) (rpoS) [Streptomyces sp. NBC_00637 strain NBC 00637]
MATRAVARRKSANGETTDAARSVRAHGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVFAQQVLDGDEESRAD
ASRDELEALVVESERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNRENGRDPEPAEIATELGSTPERVTDVLDWARDPVSLNMAVDDQGETQF
GDLLEDTSAVSPEQSVMTLLRSEELDGLIDRLEPRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFEAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=670247 OG440_RS21450 WP_406008409.1 4874128..4875126(+) (rpoS) [Streptomyces sp. NBC_00637 strain NBC 00637]
ATGGCAACCCGTGCCGTCGCCCGTCGCAAGTCCGCCAACGGCGAGACGACCGACGCGGCCCGCAGTGTTCGCGCCCATGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAAATCGCGCGTACACCTCTGCTCGACGCCGCCAAGG
AAGTCGAGTTGTCACAGATCATCGAGGCGGGTGTATTCGCACAACAGGTCCTCGACGGCGACGAGGAGTCCCGGGCGGAC
GCCTCGCGCGATGAGCTTGAGGCCCTGGTCGTCGAGAGCGAGCGGGCCAAGGACGTCTTCATCCGGTCCAACCTCCGGCT
GGTCGTCGCGGTGGCCCGCCGCTACCCCCGTAGCGGTCTCCCGCTCCTCGACCTCATCCAGGAGGGCAACGCCGGTCTGG
TCCGCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGTCAGGCCATC
ACCCGCTCGATAGCGGACCAGTCGCGCACGATCCGCCTGCCCGTCCACCTGGTGGAGGAGCTCGGCCGGATCCGTCGTGT
GCAGCGCGAGTTCAACCGCGAGAACGGCCGTGACCCGGAGCCCGCCGAGATCGCGACCGAGCTCGGTTCGACGCCGGAGC
GCGTCACGGACGTTCTGGACTGGGCCCGCGACCCGGTCTCGCTGAACATGGCGGTCGACGACCAGGGCGAGACCCAGTTC
GGCGACCTGCTGGAGGACACCTCCGCGGTCTCGCCGGAGCAGTCCGTCATGACCCTGCTGCGCAGCGAGGAACTGGACGG
CCTGATCGACCGCCTCGAGCCGCGCACCGCCTCCATCATCAAGATGCGGTACGGCATCGACGACGGCCGTGAGCGCACCC
TCACCGAGGTCGGCAAGGAACACGGCCTGACGAGGGAACGCATCCGTCAGATCGAGAAGCACGCCCTGCTGGAACTGAAG
AAGCTGGCCCGCGACACGGGCTTCGAGGCAGCCGCGTAA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(269-321)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70 region 3 (Sigma70_r3)

(179-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.134

90.06

0.361