Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   MST18_RS06140 Genome accession   NZ_CP094555
Coordinates   1252778..1253488 (+) Length   236 a.a.
NCBI ID   WP_078191819.1    Uniprot ID   -
Organism   Acinetobacter sp. YH12068_T     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1247778..1258488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST18_RS06115 (MST18_06110) - 1248048..1248953 (+) 906 WP_180133114.1 DUF58 domain-containing protein -
  MST18_RS06120 (MST18_06115) - 1248957..1250969 (+) 2013 WP_180133115.1 DUF3488 and transglutaminase-like domain-containing protein -
  MST18_RS06130 (MST18_06125) - 1251146..1251796 (-) 651 Protein_1160 IS5 family transposase -
  MST18_RS06135 (MST18_06130) - 1252201..1252629 (-) 429 WP_078191820.1 OsmC family protein -
  MST18_RS06140 (MST18_06135) crp 1252778..1253488 (+) 711 WP_078191819.1 cAMP-activated global transcriptional regulator CRP Regulator
  MST18_RS06145 (MST18_06140) - 1253692..1254741 (+) 1050 WP_180101875.1 NADP(H)-dependent aldo-keto reductase -
  MST18_RS06150 (MST18_06145) clpB 1255089..1257668 (+) 2580 WP_180035308.1 ATP-dependent chaperone ClpB -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26567.21 Da        Isoelectric Point: 4.6738

>NTDB_id=670172 MST18_RS06140 WP_078191819.1 1252778..1253488(+) (crp) [Acinetobacter sp. YH12068_T]
MTSNFSQLSTDALSPGQLPESVKALLKRAYINRYPKRTTIIDAGSESKSLYLILKGSVSIILREDDEREIVVAYLNAGDF
FGEMGLFEANAQRTAEVRTRDVCEIAEITYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEEKSQLASDDFDDEE

Nucleotide


Download         Length: 711 bp        

>NTDB_id=670172 MST18_RS06140 WP_078191819.1 1252778..1253488(+) (crp) [Acinetobacter sp. YH12068_T]
ATGACTTCAAACTTTTCACAACTTAGCACAGATGCGCTATCTCCGGGGCAGTTACCTGAGTCGGTGAAGGCATTATTAAA
ACGTGCATATATTAATCGTTACCCAAAACGTACAACAATCATTGATGCGGGCTCAGAATCTAAATCTTTGTATTTAATTC
TTAAGGGTTCAGTATCTATCATTTTACGCGAAGATGATGAGCGTGAAATTGTGGTTGCGTACTTAAATGCGGGTGACTTT
TTTGGGGAAATGGGGCTATTCGAAGCAAATGCACAGCGTACTGCAGAAGTGCGTACGCGAGATGTATGTGAAATTGCTGA
GATTACCTATGAAAACTTTCATGAATTAAGTAAACAATACCCAGACTTAAGTTATGCGGTATTTGCACAGCTTGTACGCC
GTCTTAAAAATACGACGCGTAAAGTAACTGACCTTGCGTTTATTGACGTATCAGGTCGAATTGCACGTTGCTTAATTGAT
TTATCTTCACAACCAGAGGCAATGATTTTGCCGAATGGTCGTCAGATTCGTATTACTCGTCAAGAGATTGGTCGTATCGT
GGGTTGTTCCCGTGAAATGGTTGGTCGTGTTCTAAAAACACTTGAAGAGCAAGGCATGATCGAAACTGATGGTAAAGCGA
TTCTAATTTTTGATGCATCGCTTGAAGAGAAAAGCCAATTGGCTTCTGACGATTTCGACGACGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

91.102

100

0.911
  crp Vibrio cholerae strain A1552

47.573

87.288

0.415
  crp Haemophilus influenzae Rd KW20

48.718

82.627

0.403