Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   MST18_RS01310 Genome accession   NZ_CP094555
Coordinates   278067..278927 (-) Length   286 a.a.
NCBI ID   WP_180133247.1    Uniprot ID   -
Organism   Acinetobacter sp. YH12068_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 273067..283927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST18_RS01290 (MST18_01290) - 275254..275577 (+) 324 WP_067763086.1 pyrimidine/purine nucleoside phosphorylase -
  MST18_RS01295 (MST18_01295) rlmB 275753..276511 (+) 759 WP_180133250.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  MST18_RS01300 (MST18_01300) - 276520..277440 (+) 921 WP_373686666.1 DMT family transporter -
  MST18_RS01305 (MST18_01305) coaE 277455..278057 (-) 603 WP_180133248.1 dephospho-CoA kinase -
  MST18_RS01310 (MST18_01310) pilD 278067..278927 (-) 861 WP_180133247.1 A24 family peptidase Machinery gene
  MST18_RS01315 (MST18_01315) pilC 278927..280153 (-) 1227 WP_078192563.1 type II secretion system F family protein Machinery gene
  MST18_RS01320 (MST18_01320) pilB 280186..281895 (-) 1710 WP_180133246.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MST18_RS01325 (MST18_01325) tpiA 282171..282962 (+) 792 WP_180133245.1 triose-phosphate isomerase -
  MST18_RS01330 (MST18_01330) secG 282976..283305 (+) 330 WP_078192560.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 31969.46 Da        Isoelectric Point: 8.2618

>NTDB_id=670159 MST18_RS01310 WP_180133247.1 278067..278927(-) (pilD) [Acinetobacter sp. YH12068_T]
MQELITYLINTPIALYIAIGIFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLFLHPDQPIIDETKITLSTPASTCPKCKTP
IRWYQNIPVISWIVLRGKCGSCKNPISSRYPLIELLTMICALIVVAVFGPTIQMLFGLVLTYVLIALTFIDFDTQLLPDR
YTLPLAALGLGVNSYAIYTSATSAIWGYIIGFLCLWIVYFLFKIITGKEGMGYGDFKLLAALGAWMGPFLLPLIVLLSSL
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGDQIMKIYLGQ

Nucleotide


Download         Length: 861 bp        

>NTDB_id=670159 MST18_RS01310 WP_180133247.1 278067..278927(-) (pilD) [Acinetobacter sp. YH12068_T]
ATGCAAGAATTAATAACATATTTAATTAATACCCCAATTGCGTTATATATCGCAATTGGGATTTTTAGTCTTTGCATCGG
TAGTTTTTTGAATGTGGTAATTTACCGCACACCAAAGATGATGGAACAAGAATGGCGTACGGATTGCCAACTGTTTTTAC
ATCCGGATCAACCGATTATTGACGAAACAAAGATCACACTGAGCACACCTGCTTCAACCTGCCCAAAATGCAAAACGCCC
ATTCGTTGGTATCAAAACATTCCAGTCATCAGTTGGATCGTGTTACGCGGAAAATGTGGAAGTTGCAAAAACCCGATCAG
TAGCCGTTATCCACTGATCGAATTACTCACCATGATCTGTGCGCTGATTGTTGTTGCAGTTTTTGGTCCAACCATCCAGA
TGCTGTTTGGTTTGGTGCTGACTTATGTATTGATTGCCTTAACATTTATTGACTTTGACACCCAACTTTTACCTGACCGC
TATACCCTTCCTTTGGCTGCACTCGGGCTTGGCGTGAATAGCTATGCCATTTATACCTCTGCAACCTCAGCCATTTGGGG
ATATATCATCGGCTTCTTATGCCTATGGATTGTTTACTTTTTATTTAAAATCATCACTGGCAAAGAAGGTATGGGCTATG
GTGACTTTAAGCTTTTAGCTGCCTTGGGTGCATGGATGGGCCCTTTCCTGCTCCCACTGATTGTATTACTCTCTTCACTG
GTAGGTGCAATCATTGGCATTATTTTGCTCAAAGTTCGTAAAGAAAACCAACCTTTTGCATTTGGTCCCTATATTGCCAT
CGCTGGATGGATCGCCTTTTTATGGGGTGATCAAATTATGAAAATTTATTTGGGTCAGTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

79.649

99.65

0.794
  pilD Acinetobacter nosocomialis M2

79.649

99.65

0.794
  pilD Vibrio cholerae strain A1552

54.511

93.007

0.507
  pilD Vibrio campbellii strain DS40M4

53.184

93.357

0.497
  pilD Neisseria gonorrhoeae MS11

46.886

95.455

0.448