Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   MST17_RS06545 Genome accession   NZ_CP094545
Coordinates   1290639..1291349 (+) Length   236 a.a.
NCBI ID   WP_078191819.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16056_T     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1285639..1296349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST17_RS06515 (MST17_06500) - 1285651..1286607 (+) 957 WP_180026449.1 MoxR family ATPase -
  MST17_RS06520 (MST17_06505) - 1286620..1287525 (+) 906 WP_180026448.1 DUF58 domain-containing protein -
  MST17_RS06525 (MST17_06510) - 1287529..1289541 (+) 2013 WP_180026447.1 DUF3488 and transglutaminase-like domain-containing protein -
  MST17_RS06535 (MST17_06520) - 1289718..1289937 (-) 220 Protein_1239 IS5/IS1182 family transposase -
  MST17_RS06540 (MST17_06525) - 1290062..1290490 (-) 429 WP_180009335.1 OsmC family protein -
  MST17_RS06545 (MST17_06530) crp 1290639..1291349 (+) 711 WP_078191819.1 cAMP-activated global transcriptional regulator CRP Regulator
  MST17_RS06550 (MST17_06535) - 1291552..1292601 (+) 1050 WP_180026446.1 NADP(H)-dependent aldo-keto reductase -
  MST17_RS06555 (MST17_06540) clpB 1292949..1295528 (+) 2580 WP_180026445.1 ATP-dependent chaperone ClpB -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26567.21 Da        Isoelectric Point: 4.6738

>NTDB_id=670135 MST17_RS06545 WP_078191819.1 1290639..1291349(+) (crp) [Acinetobacter sp. YH16056_T]
MTSNFSQLSTDALSPGQLPESVKALLKRAYINRYPKRTTIIDAGSESKSLYLILKGSVSIILREDDEREIVVAYLNAGDF
FGEMGLFEANAQRTAEVRTRDVCEIAEITYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEEKSQLASDDFDDEE

Nucleotide


Download         Length: 711 bp        

>NTDB_id=670135 MST17_RS06545 WP_078191819.1 1290639..1291349(+) (crp) [Acinetobacter sp. YH16056_T]
ATGACTTCAAACTTTTCACAACTTAGCACAGATGCGCTATCTCCGGGGCAGTTACCTGAGTCGGTGAAGGCATTATTAAA
ACGTGCATATATTAATCGTTACCCAAAACGTACAACAATCATTGATGCGGGCTCAGAATCTAAATCTTTGTATTTAATTC
TTAAGGGTTCAGTATCTATCATTTTACGCGAAGATGATGAGCGTGAAATTGTGGTTGCGTACTTAAATGCGGGTGACTTT
TTTGGGGAAATGGGTCTATTCGAAGCAAATGCACAGCGTACTGCAGAAGTGCGTACGCGTGATGTATGTGAAATTGCTGA
GATTACCTATGAAAACTTTCATGAATTAAGTAAACAATACCCAGACTTAAGTTATGCGGTATTTGCACAGCTTGTACGCC
GTCTTAAAAATACGACGCGTAAAGTAACTGACCTTGCGTTTATCGACGTGTCAGGTCGTATTGCACGTTGCTTAATTGAT
TTATCTTCACAACCAGAGGCAATGATTTTGCCGAATGGTCGTCAGATTCGTATTACTCGTCAAGAGATTGGTCGTATCGT
GGGTTGTTCCCGTGAAATGGTTGGTCGTGTTCTAAAAACACTTGAAGAGCAAGGCATGATCGAAACTGATGGTAAAGCGA
TTCTAATTTTTGATGCATCGCTTGAAGAGAAAAGCCAATTGGCTTCTGACGATTTCGACGACGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

91.102

100

0.911
  crp Vibrio cholerae strain A1552

47.573

87.288

0.415
  crp Haemophilus influenzae Rd KW20

48.718

82.627

0.403