Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   MST16_RS15625 Genome accession   NZ_CP094541
Coordinates   3167578..3169005 (+) Length   475 a.a.
NCBI ID   WP_180064890.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16040_T     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3162578..3174005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST16_RS15605 (MST16_15575) thrC 3162809..3163948 (+) 1140 WP_078192584.1 threonine synthase -
  MST16_RS15610 (MST16_15580) - 3164074..3165123 (-) 1050 WP_180004717.1 serine hydrolase -
  MST16_RS15615 (MST16_15585) - 3165336..3165971 (+) 636 WP_078189449.1 response regulator -
  MST16_RS15620 (MST16_15590) pilS 3165993..3167558 (+) 1566 WP_168378225.1 PAS domain-containing sensor histidine kinase Regulator
  MST16_RS15625 (MST16_15595) pilR 3167578..3169005 (+) 1428 WP_180064890.1 sigma-54 dependent transcriptional regulator Regulator
  MST16_RS15630 (MST16_15600) - 3169028..3170203 (-) 1176 WP_180059120.1 S41 family peptidase -
  MST16_RS15635 (MST16_15605) gpmI 3170221..3171768 (-) 1548 WP_180064891.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  MST16_RS15640 (MST16_15610) lptG 3171891..3172961 (-) 1071 WP_180039929.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 53227.09 Da        Isoelectric Point: 5.7582

>NTDB_id=670108 MST16_RS15625 WP_180064890.1 3167578..3169005(+) (pilR) [Acinetobacter sp. YH16040_T]
MDSQPLVLLVDDEEDLCMLMQMSLSRMGVKTHVAHRLDEAKKALSTYSYDACLTDLNLPDGNGLQLLDWMNEHCPALPVA
VLTAYGNMDIAIAALKAGAFDFVSKPINPKHLEQLLQKALNKPLAEDITSQDALEHKMLIGESLPIQQLRRTLKKIARSQ
APVFITGESGTGKEVVANLVHRLSNRNEGPFIAINCGAIPTELMESELFGHKKGSFSGATQDKQGLIQSAHGGSLFLDEI
AELPLAMQVKLLRAVQEKRIRPVGSDCEIDVDFRVISASHQDLEALVQQGRFRQDLFFRIHVMDLVLPALRERGDDILLL
AQHFIQKISHEWEIATKPLTERAKSFLLSQYYPGNVRELRNIIERAMTLCDDDQIDLQHLQSAPLRQPSAQFNSAPTTNE
SAQLGANSNEQSVVPRKLPEEGLELFLENIEKEVLMNALNITHWNRTLAAKKLGMSFRSLRYRLKKFGLDTEDEE

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=670108 MST16_RS15625 WP_180064890.1 3167578..3169005(+) (pilR) [Acinetobacter sp. YH16040_T]
GTGGATTCACAACCACTGGTATTGTTAGTTGATGACGAAGAAGACTTATGTATGCTGATGCAGATGTCTTTATCAAGGAT
GGGGGTTAAAACGCATGTTGCACATCGCCTCGACGAAGCTAAAAAAGCCTTGTCTACCTATAGCTACGATGCCTGCCTAA
CCGATCTCAACTTACCCGATGGTAATGGTCTACAGCTCTTAGATTGGATGAATGAACACTGTCCTGCCCTGCCCGTTGCT
GTGCTTACAGCCTATGGCAACATGGACATTGCCATTGCCGCATTAAAGGCGGGAGCATTCGATTTTGTCAGCAAACCGAT
CAATCCCAAACATCTTGAACAACTGCTACAAAAAGCCCTGAATAAGCCATTGGCCGAAGACATTACTTCGCAAGATGCTT
TAGAACATAAAATGTTGATTGGTGAATCGCTTCCAATCCAGCAATTGCGTCGAACTCTAAAGAAAATTGCACGTTCACAA
GCACCTGTTTTTATTACGGGTGAATCTGGTACGGGTAAAGAGGTCGTGGCCAATTTGGTTCACCGTTTAAGCAACCGTAA
TGAAGGACCCTTTATTGCCATTAACTGCGGGGCAATTCCCACAGAGTTAATGGAAAGTGAACTTTTTGGCCATAAAAAAG
GCAGCTTTAGTGGTGCCACCCAAGACAAACAAGGTCTGATTCAATCTGCACATGGCGGTAGCTTATTTTTGGACGAAATT
GCCGAACTACCTTTAGCCATGCAAGTTAAATTGCTACGCGCAGTACAGGAAAAACGTATTCGTCCTGTAGGTTCAGACTG
TGAAATTGACGTTGATTTCCGTGTGATCAGCGCCAGCCATCAGGACTTAGAAGCACTCGTCCAACAAGGTCGCTTCCGCC
AAGATTTATTCTTCCGCATCCATGTGATGGATTTAGTGTTGCCTGCCTTACGTGAACGTGGCGACGATATCCTCTTATTG
GCTCAACATTTTATTCAAAAAATTAGCCATGAATGGGAAATTGCTACTAAGCCTCTAACTGAACGTGCGAAGAGTTTCCT
GCTCAGCCAATATTATCCAGGTAATGTGCGTGAACTCCGCAATATTATCGAACGCGCTATGACCCTCTGCGATGATGATC
AGATTGATCTTCAACATCTGCAAAGTGCGCCATTAAGACAACCAAGTGCTCAGTTCAATTCCGCTCCAACAACGAATGAA
TCCGCTCAGCTAGGTGCAAACAGCAACGAACAGAGTGTGGTCCCTCGCAAACTACCTGAAGAAGGCTTAGAGCTCTTTTT
AGAAAATATCGAAAAAGAAGTGCTCATGAATGCGTTGAACATCACCCACTGGAACCGAACCCTTGCCGCAAAAAAATTAG
GCATGTCATTCCGTTCATTGCGCTATCGTTTGAAAAAATTCGGTTTAGATACCGAAGACGAAGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(426-467)

Response regulator receiver domain (Response_reg)

(7-116)

Sigma-54 interaction domain (Sigma54_activat)

(139-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

73.895

100

0.739
  pilR Pseudomonas aeruginosa PAK

48.932

98.526

0.482