Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   MST16_RS15620 Genome accession   NZ_CP094541
Coordinates   3165993..3167558 (+) Length   521 a.a.
NCBI ID   WP_168378225.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16040_T     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3160993..3172558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST16_RS15600 (MST16_15570) - 3161442..3162746 (+) 1305 WP_078192857.1 homoserine dehydrogenase -
  MST16_RS15605 (MST16_15575) thrC 3162809..3163948 (+) 1140 WP_078192584.1 threonine synthase -
  MST16_RS15610 (MST16_15580) - 3164074..3165123 (-) 1050 WP_180004717.1 serine hydrolase -
  MST16_RS15615 (MST16_15585) - 3165336..3165971 (+) 636 WP_078189449.1 response regulator -
  MST16_RS15620 (MST16_15590) pilS 3165993..3167558 (+) 1566 WP_168378225.1 PAS domain-containing sensor histidine kinase Regulator
  MST16_RS15625 (MST16_15595) pilR 3167578..3169005 (+) 1428 WP_180064890.1 sigma-54 dependent transcriptional regulator Regulator
  MST16_RS15630 (MST16_15600) - 3169028..3170203 (-) 1176 WP_180059120.1 S41 family peptidase -
  MST16_RS15635 (MST16_15605) gpmI 3170221..3171768 (-) 1548 WP_180064891.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59905.64 Da        Isoelectric Point: 6.8758

>NTDB_id=670107 MST16_RS15620 WP_168378225.1 3165993..3167558(+) (pilS) [Acinetobacter sp. YH16040_T]
MTQRSIHSELNQYHLGLWYSAYRFIISACLLLVFLLTYTQFSSDYEYPRLYLYVLTIYLLFTSIQFMSLGRFKVRIPNQL
LLLFIVDVISLSLLTLAIDGPNLHLSLLFVITIFAASLLLDAQKALVITLIAVICVVYQLFLGSILEFTSLKNLTNSAIL
AFLFCVVYGSAQIAVKRFQLLENLNFSQSLELHRLQNINRYILEQIDTGYLVLDENCHVVLSNPAACHLLGMPNFYHHDQ
YPLYTTQPDLFELLKFEDLKSGEKFQFESQQSQYHIQVLVQKLVVPHQMLTLLILQDAQKLNQQVQQLKLAALGQLSASI
AHEIRNPLAAIVHANDLYPQSDTEQQHMLNHMISRQAVRIDRIIQDTLNMVRNKETHPTRLNLEKFLPLFLQEDLADIQQ
NIRLNVQAKTLIDFDEAQFRQILINLIRNAIRHNNPDMSYIEVVARTDQKKVQIDVRDFGHGVALQNRAQLFQPFFSTEI
TGTGLGLYLAHSFCEANQAQLSYVEKKQGACFRIECLQAVI

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=670107 MST16_RS15620 WP_168378225.1 3165993..3167558(+) (pilS) [Acinetobacter sp. YH16040_T]
ATGACACAGCGTTCAATCCATAGTGAATTGAACCAGTATCATTTGGGCCTTTGGTACAGTGCTTATCGCTTTATCATCAG
TGCCTGTCTGTTACTGGTCTTTTTACTGACCTACACTCAATTCAGTTCAGATTATGAATACCCACGTTTATACCTATATG
TATTGACGATTTATTTGCTGTTTACCAGCATTCAATTCATGTCGCTTGGACGCTTCAAAGTCCGTATTCCAAACCAGTTA
CTGCTGTTATTCATTGTAGATGTCATTTCGCTGAGCTTACTGACCTTAGCCATCGATGGACCCAATTTACATTTGAGTTT
GCTGTTTGTGATTACGATTTTTGCAGCATCCCTGTTATTAGATGCCCAAAAAGCCTTGGTCATCACCCTCATCGCTGTGA
TTTGCGTGGTGTATCAACTGTTTTTAGGTTCAATTCTTGAATTTACCTCACTCAAAAATTTAACCAACAGTGCGATTTTG
GCTTTTTTATTTTGTGTGGTGTATGGCAGTGCGCAAATTGCCGTGAAACGTTTCCAGTTACTAGAAAATCTGAATTTTTC
GCAATCCTTAGAGCTACATCGACTACAAAACATTAACCGCTATATCTTGGAGCAGATTGATACGGGCTATTTGGTGTTGG
ATGAAAACTGTCATGTGGTGCTGAGTAATCCTGCTGCTTGCCATTTACTCGGCATGCCAAATTTTTATCATCATGATCAA
TATCCACTGTATACCACGCAGCCCGATTTATTTGAATTACTCAAATTTGAAGATTTAAAAAGCGGTGAAAAATTCCAATT
TGAATCCCAACAAAGCCAATACCACATTCAGGTACTCGTACAAAAACTCGTTGTGCCGCATCAAATGCTGACCTTGCTGA
TTTTACAAGATGCACAAAAACTCAATCAGCAAGTGCAACAACTAAAATTAGCCGCTTTAGGGCAACTCTCCGCCAGTATT
GCACATGAAATTCGTAATCCTTTAGCCGCAATTGTGCATGCCAATGATTTATATCCGCAAAGTGATACCGAACAACAGCA
CATGTTGAATCATATGATTTCACGTCAAGCGGTGCGGATTGACCGAATTATTCAAGACACCCTAAATATGGTGCGCAATA
AGGAAACCCATCCGACTCGTCTGAATCTAGAAAAATTTTTACCGTTATTCCTGCAAGAAGATCTGGCAGACATTCAACAG
AACATTCGGCTCAATGTACAAGCCAAGACTTTAATCGATTTTGATGAGGCACAGTTCAGACAAATTTTAATCAACCTAAT
TCGTAATGCGATTCGCCATAACAATCCGGACATGTCGTATATCGAAGTGGTGGCGCGTACGGATCAGAAAAAAGTCCAGA
TCGATGTCCGAGATTTCGGTCATGGGGTTGCTTTACAAAACCGCGCACAGTTATTTCAACCATTTTTTAGTACCGAAATT
ACTGGAACTGGTTTAGGATTATATCTTGCTCATAGCTTCTGTGAAGCGAATCAAGCACAGCTTTCCTATGTAGAAAAAAA
ACAGGGAGCTTGCTTTAGGATTGAGTGCTTACAAGCTGTTATTTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

56.634

96.929

0.549