Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   MST16_RS06375 Genome accession   NZ_CP094541
Coordinates   1311296..1312006 (+) Length   236 a.a.
NCBI ID   WP_180004890.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16040_T     
Function   regulate competence development (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1309569..1310315 1311296..1312006 flank 981


Gene organization within MGE regions


Location: 1309569..1312006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST16_RS06365 (MST16_06350) - 1309569..1310315 (-) 747 WP_180010396.1 IS5 family transposase -
  MST16_RS06370 (MST16_06355) - 1310719..1311147 (-) 429 WP_078191820.1 OsmC family protein -
  MST16_RS06375 (MST16_06360) crp 1311296..1312006 (+) 711 WP_180004890.1 cAMP-activated global transcriptional regulator CRP Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26567.21 Da        Isoelectric Point: 4.6738

>NTDB_id=670087 MST16_RS06375 WP_180004890.1 1311296..1312006(+) (crp) [Acinetobacter sp. YH16040_T]
MTSNFSQLSTDALSPGQLPESVKALLKRAYINRYPKRTTIIDAGSESKSLYLILKGSVSIILREDDEREIVVAYLNAGDF
FGEMGLFEANAQRTAEVRTRDVCEIAEITYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEDKSQLASDEFDDEE

Nucleotide


Download         Length: 711 bp        

>NTDB_id=670087 MST16_RS06375 WP_180004890.1 1311296..1312006(+) (crp) [Acinetobacter sp. YH16040_T]
ATGACTTCAAACTTTTCACAACTTAGCACAGATGCGCTATCTCCGGGGCAGTTACCTGAGTCGGTGAAGGCATTATTAAA
ACGTGCATATATTAATCGTTACCCAAAACGTACAACAATCATTGATGCGGGCTCAGAATCTAAATCTTTGTATTTAATTC
TTAAGGGTTCAGTATCTATCATTTTACGCGAAGATGATGAGCGTGAAATTGTGGTTGCGTACTTAAATGCGGGTGACTTT
TTTGGGGAAATGGGTCTATTCGAAGCAAATGCACAGCGTACTGCAGAAGTGCGTACGCGAGATGTATGTGAAATTGCTGA
GATTACCTATGAAAACTTTCATGAATTAAGTAAACAATACCCAGACTTAAGTTATGCGGTATTTGCACAGCTTGTACGCC
GTCTTAAAAATACGACGCGTAAAGTAACTGACCTTGCGTTTATTGACGTGTCAGGTCGAATTGCACGTTGCTTAATTGAT
TTATCTTCACAACCTGAAGCAATGATTTTGCCGAATGGTCGTCAGATTCGTATTACTCGTCAAGAGATTGGTCGTATCGT
GGGTTGTTCCCGTGAAATGGTTGGTCGTGTTCTAAAAACACTTGAAGAGCAAGGCATGATTGAAACTGATGGTAAAGCGA
TTCTAATTTTTGATGCATCGCTTGAAGATAAAAGTCAATTGGCTTCTGACGAATTTGACGACGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

90.254

100

0.903
  crp Vibrio cholerae strain A1552

47.573

87.288

0.415
  crp Haemophilus influenzae Rd KW20

48.718

82.627

0.403