Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   OIE42_RS35495 Genome accession   NZ_CP109038
Coordinates   8011506..8011754 (-) Length   82 a.a.
NCBI ID   WP_406346714.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00648     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 8006506..8016754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE42_RS35470 (OIE42_35460) - 8006834..8007244 (+) 411 WP_406346709.1 RidA family protein -
  OIE42_RS35475 (OIE42_35465) - 8007190..8007882 (-) 693 WP_406346710.1 hypothetical protein -
  OIE42_RS35480 (OIE42_35470) - 8007902..8008030 (-) 129 WP_406346711.1 hypothetical protein -
  OIE42_RS35485 (OIE42_35475) - 8008555..8010315 (-) 1761 WP_406346712.1 M4 family metallopeptidase -
  OIE42_RS35490 - 8011207..8011341 (-) 135 WP_406346713.1 histidine kinase -
  OIE42_RS35495 (OIE42_35480) spo0A 8011506..8011754 (-) 249 WP_406346714.1 response regulator transcription factor Regulator
  OIE42_RS35500 (OIE42_35485) - 8012408..8013298 (+) 891 WP_406346716.1 SGNH/GDSL hydrolase family protein -
  OIE42_RS35505 (OIE42_35490) - 8013571..8013915 (+) 345 WP_406346718.1 hypothetical protein -
  OIE42_RS35510 - 8014352..8014849 (-) 498 WP_406346719.1 transposase -
  OIE42_RS35515 (OIE42_35500) - 8015239..8016477 (-) 1239 WP_406346720.1 DUF2993 domain-containing protein -

Sequence

Protein


Download         Length: 82 a.a.        Molecular weight: 8769.07 Da        Isoelectric Point: 4.2803

>NTDB_id=670034 OIE42_RS35495 WP_406346714.1 8011506..8011754(-) (spo0A) [Streptomyces sp. NBC_00648]
MRVVASDSGVDAVAVVTEHWLDVVLLDIQMPDLDGLGVLRQLKALANPPAVVMLTSFGPNEYIHRALAGGAADYRLKDAD
PE

Nucleotide


Download         Length: 249 bp        

>NTDB_id=670034 OIE42_RS35495 WP_406346714.1 8011506..8011754(-) (spo0A) [Streptomyces sp. NBC_00648]
ATGCGGGTGGTCGCGTCCGATAGTGGCGTGGACGCCGTTGCCGTCGTCACCGAGCATTGGCTCGACGTGGTACTCCTCGA
TATCCAGATGCCGGACCTGGACGGCTTGGGTGTGCTGCGACAGCTCAAGGCACTCGCCAACCCGCCGGCCGTGGTGATGC
TGACGTCGTTCGGGCCGAACGAGTACATCCACCGCGCCTTGGCGGGTGGAGCGGCCGACTACCGCCTGAAGGATGCTGAT
CCCGAGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(2-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

40.26

93.902

0.378
  letA Legionella pneumophila str. Paris

37.5

97.561

0.366
  letA Legionella pneumophila strain ERS1305867

37.5

97.561

0.366