Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   MRY16_RS13965 Genome accession   NZ_CP094445
Coordinates   3000045..3001475 (+) Length   476 a.a.
NCBI ID   WP_004917021.1    Uniprot ID   -
Organism   Acinetobacter junii strain A2-1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2995045..3006475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRY16_RS13945 (MRY16_13945) - 2995755..2996369 (-) 615 WP_243483505.1 hypothetical protein -
  MRY16_RS13950 (MRY16_13950) pbpG 2996533..2997594 (-) 1062 WP_125297253.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  MRY16_RS13955 (MRY16_13955) - 2997806..2998441 (+) 636 WP_004957336.1 response regulator -
  MRY16_RS13960 (MRY16_13960) pilS 2998457..3000022 (+) 1566 WP_243483507.1 ATP-binding protein Regulator
  MRY16_RS13965 (MRY16_13965) pilR 3000045..3001475 (+) 1431 WP_004917021.1 sigma-54 dependent transcriptional regulator Regulator
  MRY16_RS13970 (MRY16_13970) - 3001515..3002690 (-) 1176 WP_004917024.1 S41 family peptidase -
  MRY16_RS13975 (MRY16_13975) gpmI 3002700..3004244 (-) 1545 WP_099949328.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  MRY16_RS13980 (MRY16_13980) lptG 3004364..3005434 (-) 1071 WP_005403525.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 53458.42 Da        Isoelectric Point: 6.1504

>NTDB_id=669555 MRY16_RS13965 WP_004917021.1 3000045..3001475(+) (pilR) [Acinetobacter junii strain A2-1]
MATKQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKKFFTEFQYDACLTDLNLPDGNGLDLVKHVTQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQTHLDQLIQKALNRPQPEQEAVETALENKLLIGRSAPIQQLRIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLELLVQQGRFRQDLFFRIHVMDIVLPPLRERGQDILI
LANHFIQKISQEWELPVKSLTTRAEQFLLQQYFPGNVRELRNIIERAITLSDDETIDLAHLQTAPLRSSISIPSNAYVQS
DESEITLQSASPNPSSKKLPPEGLERYLENIEKEVLLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEDDE

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=669555 MRY16_RS13965 WP_004917021.1 3000045..3001475(+) (pilR) [Acinetobacter junii strain A2-1]
ATGGCAACTAAACAACCTCTCGTCTTACTCGTAGACGATGAAGAAGACTTGTGTCTTCTTATGCAAATGACGCTCGCACG
TATGGGAATCAAAACTCATCTTGCATATCGTGTGGAGCAAGCCAAAAAATTCTTTACCGAGTTTCAGTACGATGCATGTC
TAACCGATCTTAACCTTCCAGATGGAAATGGACTTGATCTCGTTAAACATGTGACTCAAAACTATCCAAACACACCCATC
GCTGTTCTTACTGCTTACGGAAATATGGACATTGCAATTGCAGCACTGAAAGCTGGAGCGTTTGACTTTGTTAGCAAACC
AGTGAATCAGACACATCTTGATCAACTGATTCAAAAAGCTTTAAACCGCCCTCAACCAGAACAAGAGGCGGTAGAAACAG
CCTTAGAAAACAAATTGTTGATTGGGCGTTCAGCACCTATTCAACAATTACGGATCGCTTTAAAAAAGATTGCCCGTTCA
CAAGCACCTGTTTTTATTACAGGTGAATCAGGAACAGGAAAAGAAGTTGTTGCGAACTTAGTTCATCGTTTAAGTAATCG
CAGCGAAGGACCTTTCATTGCCATCAACTGTGGTGCTATTCCAACAGAATTAATGGAAAGCGAATTATTCGGTCATAAGA
AAGGCAGCTTTACAGGTGCAACACAAGATAAACAAGGACTTATCTTATCTGCACACGGTGGCAGCCTTTTTTTAGATGAA
ATCGCAGAACTTCCCTTAAATATGCAAGTAAAACTTTTACGTGCAGTACAAGAGAAAAAAATTCGTCCAGTTGGATCAGA
TCAAGAAATTGATGTGGATTTCCGTGTGATTAGTGCCAGTCACCAAGATTTAGAACTCTTGGTTCAGCAAGGTCGCTTTA
GACAAGATTTATTCTTCCGCATTCATGTGATGGATATCGTATTGCCTCCACTTCGTGAACGTGGTCAAGATATCTTAATA
CTGGCAAATCATTTTATTCAAAAGATTAGCCAAGAATGGGAGTTACCTGTTAAATCCCTCACCACACGTGCAGAACAGTT
CCTCTTGCAGCAATATTTTCCAGGCAATGTTCGCGAACTTCGAAATATTATTGAACGTGCGATCACTCTCAGTGATGATG
AAACCATTGATTTGGCTCATCTGCAAACCGCACCTCTGCGTAGCTCAATCAGTATTCCTTCAAATGCTTATGTTCAGTCA
GATGAAAGTGAAATAACGCTGCAAAGTGCGAGTCCAAACCCAAGCTCTAAAAAATTACCGCCAGAAGGTTTGGAACGCTA
TTTAGAAAATATTGAAAAAGAAGTGTTATTGAATGCTTTAAATCTGACCCATTGGAATCGAACTTTAGCAGCAAAAAAAC
TTGGAATGACTTTCCGATCTTTACGCTATCGTTTGAAAAAGTTCGGTTTAGATACTGAGGATGATGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(428-468)

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

84.034

100

0.84
  pilR Pseudomonas aeruginosa PAK

50.216

97.479

0.49

Multiple sequence alignment