Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   MRY16_RS13960 Genome accession   NZ_CP094445
Coordinates   2998457..3000022 (+) Length   521 a.a.
NCBI ID   WP_243483507.1    Uniprot ID   -
Organism   Acinetobacter junii strain A2-1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2993457..3005022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRY16_RS13935 (MRY16_13935) thrC 2993746..2994885 (+) 1140 WP_002048893.1 threonine synthase -
  MRY16_RS13940 (MRY16_13940) - 2994952..2995731 (-) 780 WP_243483504.1 hypothetical protein -
  MRY16_RS13945 (MRY16_13945) - 2995755..2996369 (-) 615 WP_243483505.1 hypothetical protein -
  MRY16_RS13950 (MRY16_13950) pbpG 2996533..2997594 (-) 1062 WP_125297253.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  MRY16_RS13955 (MRY16_13955) - 2997806..2998441 (+) 636 WP_004957336.1 response regulator -
  MRY16_RS13960 (MRY16_13960) pilS 2998457..3000022 (+) 1566 WP_243483507.1 ATP-binding protein Regulator
  MRY16_RS13965 (MRY16_13965) pilR 3000045..3001475 (+) 1431 WP_004917021.1 sigma-54 dependent transcriptional regulator Regulator
  MRY16_RS13970 (MRY16_13970) - 3001515..3002690 (-) 1176 WP_004917024.1 S41 family peptidase -
  MRY16_RS13975 (MRY16_13975) gpmI 3002700..3004244 (-) 1545 WP_099949328.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59283.32 Da        Isoelectric Point: 6.6882

>NTDB_id=669554 MRY16_RS13960 WP_243483507.1 2998457..3000022(+) (pilS) [Acinetobacter junii strain A2-1]
MLGKIASSVSQTVYKLGIWYSGYRLIISISLLLIYILTAEQLASDYDYPFLYFYTLICFIAFSIFQLFLLKILPVQVTKQ
LILIFLIDVICLALITFSAGGPNLQLSLLYVIVIFSSAILLNAQLSLIVTLFAVIMVVYQRFIGDFFSYNNLNHLSNSIF
LAFLFFVVHAIGRIAVQRFKILETLTFHQSIEIHQLQNINRYILEQIEDGYLVLDESNHIVLSNPAANTLLGINVPVSTE
KTPLIKWQPDLFELIKFSELKDGEEFSFESQLSPYTVNVRVKHLIVPEQPLFLLILKDAQKLTQQVQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKGSDIHQQDMLSRMISKQAKRIDSIIQDTLGMARNKPTEPQIIQLTEFFETLLNEDLADVK
SKIRISLPENLTIMFDEKQLRQVLINLIRNAIRHNAPEAEYIEVNIHLNDGRTRIDVIDFGTGVAKRDISQLFKPFFSTE
IKGTGLGLYLSHSFCEANHAKLNYIEQQQGACFRIECSKIH

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=669554 MRY16_RS13960 WP_243483507.1 2998457..3000022(+) (pilS) [Acinetobacter junii strain A2-1]
ATGCTGGGCAAAATAGCCTCTTCCGTCTCCCAAACTGTCTATAAGCTCGGTATTTGGTATAGTGGATATCGGCTGATTAT
CTCTATCAGCCTTTTGCTCATTTATATATTAACAGCTGAGCAATTAGCCTCAGATTATGATTACCCTTTTTTATATTTCT
ATACACTGATTTGCTTTATTGCATTCAGTATTTTCCAGCTTTTTTTACTCAAAATACTTCCAGTACAAGTCACTAAACAG
CTCATTTTAATTTTTCTTATTGATGTGATTTGTTTAGCGTTGATTACTTTCTCTGCAGGGGGGCCAAATTTACAATTAAG
TTTGTTATACGTAATCGTAATCTTTTCTTCTGCAATTCTACTAAACGCTCAACTCTCGCTGATCGTGACACTTTTTGCTG
TCATTATGGTGGTTTATCAACGTTTTATCGGTGATTTTTTTAGTTACAATAACTTAAATCATTTAAGTAATAGTATCTTT
CTCGCTTTTTTATTCTTTGTTGTACATGCGATTGGACGTATTGCTGTTCAACGTTTTAAAATTTTAGAGACGTTGACATT
CCATCAATCCATAGAGATTCATCAACTTCAAAATATCAACCGCTACATCCTTGAACAGATTGAAGATGGTTATCTCGTTC
TAGATGAAAGTAACCATATTGTTTTAAGTAATCCTGCTGCCAATACTTTACTTGGAATTAATGTCCCTGTTTCTACTGAG
AAAACACCTTTAATAAAATGGCAACCTGATCTTTTTGAGCTGATCAAATTTAGTGAGCTAAAAGATGGTGAGGAATTTAG
TTTTGAATCACAACTTAGCCCATACACGGTCAATGTTCGAGTCAAACATTTAATTGTTCCTGAACAGCCCCTATTCTTAT
TGATCCTGAAAGATGCCCAAAAACTTACTCAACAGGTTCAACAATTAAAATTGGCAGCTTTAGGACAACTTTCTGCAAGT
ATTGCACACGAAATCAGAAATCCACTTGCAGCTATTGTACAAGCCAATGAATTACTTAAGGGTAGCGATATCCATCAGCA
AGACATGCTATCTCGAATGATTAGCAAACAGGCAAAAAGGATCGATAGCATCATTCAAGATACTCTGGGAATGGCACGTA
ATAAACCTACTGAACCACAAATTATTCAATTAACAGAATTTTTTGAAACATTATTAAATGAAGATTTAGCAGATGTTAAA
TCTAAGATCCGAATCAGTTTGCCTGAAAATTTAACGATCATGTTTGATGAAAAACAATTAAGACAAGTATTAATCAATCT
TATTCGTAATGCTATAAGACACAATGCGCCTGAAGCAGAATATATTGAAGTGAATATTCATCTAAATGATGGCCGTACCC
GAATAGATGTGATTGATTTTGGTACAGGCGTTGCAAAAAGAGATATTTCTCAGTTATTCAAACCATTTTTTAGTACCGAA
ATTAAAGGAACTGGTTTAGGATTGTACTTGTCTCATAGTTTTTGTGAGGCAAATCATGCAAAGCTCAATTATATAGAGCA
ACAACAAGGAGCATGTTTCAGGATTGAATGCTCAAAAATTCATTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

65.31

99.04

0.647

Multiple sequence alignment