Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   GM3709_RS10670 Genome accession   NZ_AP014821
Coordinates   2549811..2550173 (-) Length   120 a.a.
NCBI ID   WP_066119053.1    Uniprot ID   A0A0D6ARQ5
Organism   Geminocystis sp. NIES-3709     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2544811..2555173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GM3709_RS10655 (GM3709_2212) - 2545589..2546548 (-) 960 WP_066119045.1 LysR family transcriptional regulator -
  GM3709_RS20170 - 2547187..2547381 (-) 195 Protein_2138 transposase -
  GM3709_RS10660 (GM3709_2214) - 2547718..2548917 (+) 1200 WP_066119047.1 phosphoglycerate kinase -
  GM3709_RS10665 (GM3709_2215) - 2549169..2549705 (-) 537 WP_066119050.1 chemotaxis protein CheW -
  GM3709_RS10670 (GM3709_2216) pilH 2549811..2550173 (-) 363 WP_066119053.1 response regulator transcription factor Machinery gene
  GM3709_RS10675 (GM3709_2217) - 2550279..2551481 (-) 1203 WP_066119060.1 response regulator -
  GM3709_RS10680 (GM3709_2218) - 2551990..2554017 (+) 2028 WP_066119063.1 GAF domain-containing hybrid sensor histidine kinase/response regulator -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13004.04 Da        Isoelectric Point: 4.7399

>NTDB_id=66948 GM3709_RS10670 WP_066119053.1 2549811..2550173(-) (pilH) [Geminocystis sp. NIES-3709]
MGNALIVDDSSTERKILVSYLQELGITVSTAESGEEALERLNGSIPDLIVLDVVLPGKSGFEVCREIKAGANTAKVPVII
CSTKGSEMDKFWGMKQGADAYIPKPVDKEEFFSAVKRLIK

Nucleotide


Download         Length: 363 bp        

>NTDB_id=66948 GM3709_RS10670 WP_066119053.1 2549811..2550173(-) (pilH) [Geminocystis sp. NIES-3709]
ATGGGAAATGCTTTAATTGTGGATGATTCTTCCACCGAAAGAAAAATATTAGTTAGTTATTTACAAGAATTAGGTATTAC
TGTTAGCACGGCAGAAAGTGGAGAAGAAGCCTTAGAAAGACTTAATGGTAGTATTCCTGACCTCATTGTTCTTGATGTTG
TACTCCCCGGCAAAAGTGGTTTTGAGGTATGTAGAGAAATCAAAGCAGGTGCTAACACAGCAAAAGTACCAGTTATTATT
TGTTCAACTAAGGGTAGTGAAATGGACAAATTTTGGGGGATGAAGCAAGGAGCAGATGCTTATATACCCAAACCTGTTGA
TAAAGAAGAATTCTTTTCTGCGGTCAAAAGATTGATTAAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D6ARQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

49.167

100

0.492
  micA Streptococcus pneumoniae Cp1015

39.167

100

0.392
  vicR Streptococcus mutans UA159

39.655

96.667

0.383

Multiple sequence alignment