Detailed information
Bioinformatically predicted
Overview
| Name | pilH | Type | Machinery gene |
| Locus tag | GM3708_RS08345 | Genome accession | NZ_AP014815 |
| Coordinates | 1892942..1893304 (-) | Length | 120 a.a. |
| NCBI ID | WP_066345539.1 | Uniprot ID | A0A0D6AFT1 |
| Organism | Geminocystis sp. NIES-3708 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1887942..1898304
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GM3708_RS08335 (GM3708_1723) | - | 1889679..1891832 (-) | 2154 | WP_066345536.1 | caspase family protein | - |
| GM3708_RS08340 (GM3708_1724) | - | 1892166..1892702 (-) | 537 | WP_066345537.1 | chemotaxis protein CheW | - |
| GM3708_RS08345 (GM3708_1725) | pilH | 1892942..1893304 (-) | 363 | WP_066345539.1 | response regulator transcription factor | Machinery gene |
| GM3708_RS08350 (GM3708_1726) | - | 1893465..1894664 (-) | 1200 | WP_066345541.1 | response regulator | - |
| GM3708_RS08355 (GM3708_1727) | - | 1894825..1895163 (+) | 339 | WP_066345542.1 | hypothetical protein | - |
| GM3708_RS08360 (GM3708_1728) | - | 1895230..1896363 (+) | 1134 | WP_066345543.1 | CO2 hydration protein | - |
| GM3708_RS08365 (GM3708_1729) | - | 1896411..1897160 (+) | 750 | WP_066345548.1 | hypothetical protein | - |
| GM3708_RS08370 (GM3708_1730) | - | 1897175..1897990 (+) | 816 | WP_066345549.1 | ATP-binding protein | - |
Sequence
Protein
Download Length: 120 a.a. Molecular weight: 13091.19 Da Isoelectric Point: 4.6185
>NTDB_id=66926 GM3708_RS08345 WP_066345539.1 1892942..1893304(-) (pilH) [Geminocystis sp. NIES-3708]
MGNALIVDDSSTERKILVSYLVEWGITVTTAESGEEALEKLSSSIPDLIILDVVLPGKSGFEICREIKAGENTGKIPVII
CSTKGSEMDKFWGMKQGADAYIPKPVDKEELFSTVKKLIK
MGNALIVDDSSTERKILVSYLVEWGITVTTAESGEEALEKLSSSIPDLIILDVVLPGKSGFEICREIKAGENTGKIPVII
CSTKGSEMDKFWGMKQGADAYIPKPVDKEELFSTVKKLIK
Nucleotide
Download Length: 363 bp
>NTDB_id=66926 GM3708_RS08345 WP_066345539.1 1892942..1893304(-) (pilH) [Geminocystis sp. NIES-3708]
ATGGGAAATGCTTTAATTGTGGATGATTCTTCGACAGAGAGAAAGATATTAGTTAGTTATTTGGTAGAATGGGGTATTAC
AGTTACTACTGCTGAAAGTGGAGAAGAAGCCTTAGAAAAATTAAGTAGTAGTATTCCTGATTTAATCATTTTGGATGTAG
TCTTACCGGGTAAAAGTGGTTTTGAAATTTGTAGAGAAATAAAAGCGGGAGAAAATACAGGGAAAATACCAGTAATTATT
TGTTCAACGAAAGGCAGTGAAATGGATAAATTTTGGGGAATGAAACAAGGTGCAGATGCTTATATACCTAAACCAGTGGA
TAAAGAAGAATTATTTTCTACCGTAAAAAAATTAATTAAGTAA
ATGGGAAATGCTTTAATTGTGGATGATTCTTCGACAGAGAGAAAGATATTAGTTAGTTATTTGGTAGAATGGGGTATTAC
AGTTACTACTGCTGAAAGTGGAGAAGAAGCCTTAGAAAAATTAAGTAGTAGTATTCCTGATTTAATCATTTTGGATGTAG
TCTTACCGGGTAAAAGTGGTTTTGAAATTTGTAGAGAAATAAAAGCGGGAGAAAATACAGGGAAAATACCAGTAATTATT
TGTTCAACGAAAGGCAGTGAAATGGATAAATTTTGGGGAATGAAACAAGGTGCAGATGCTTATATACCTAAACCAGTGGA
TAAAGAAGAATTATTTTCTACCGTAAAAAAATTAATTAAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilH | Synechocystis sp. PCC 6803 |
50 |
100 |
0.5 |
| micA | Streptococcus pneumoniae Cp1015 |
39.167 |
100 |
0.392 |
| vicR | Streptococcus mutans UA159 |
39.167 |
100 |
0.392 |