Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   MRY17_RS15100 Genome accession   NZ_CP094351
Coordinates   3415644..3417869 (-) Length   741 a.a.
NCBI ID   WP_243352398.1    Uniprot ID   -
Organism   Pseudomonas orientalis strain YB-76     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3410644..3422869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRY17_RS15065 (MRY17_15065) murB 3411013..3412032 (-) 1020 WP_191951872.1 UDP-N-acetylmuramate dehydrogenase -
  MRY17_RS15070 (MRY17_15070) - 3412029..3412493 (-) 465 WP_191951873.1 low molecular weight protein-tyrosine-phosphatase -
  MRY17_RS15075 (MRY17_15075) kdsB 3412493..3413257 (-) 765 WP_191951874.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  MRY17_RS15080 (MRY17_15080) - 3413254..3413439 (-) 186 WP_003174668.1 Trm112 family protein -
  MRY17_RS15085 (MRY17_15085) lpxK 3413464..3414474 (-) 1011 WP_191951875.1 tetraacyldisaccharide 4'-kinase -
  MRY17_RS15090 (MRY17_15090) - 3414474..3414902 (-) 429 WP_181283805.1 biopolymer transporter ExbD -
  MRY17_RS15095 (MRY17_15095) exbB 3414899..3415534 (-) 636 WP_104505301.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  MRY17_RS15100 (MRY17_15100) comA 3415644..3417869 (-) 2226 WP_243352398.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MRY17_RS15105 (MRY17_15105) - 3418005..3418520 (+) 516 WP_124358869.1 DUF2062 domain-containing protein -
  MRY17_RS15110 (MRY17_15110) - 3418524..3419882 (-) 1359 WP_191951877.1 sensor histidine kinase -
  MRY17_RS15115 (MRY17_15115) - 3419869..3420597 (-) 729 WP_191951878.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80553.47 Da        Isoelectric Point: 10.6397

>NTDB_id=669192 MRY17_RS15100 WP_243352398.1 3415644..3417869(-) (comA) [Pseudomonas orientalis strain YB-76]
MRTGMFALALGLLILRFLPALPHAGWLLVMLVLALMLLPFRTYPLAFFLLGLSWACISAQWALDDRLRPALDGETRWLEG
RVVGLPQQTDTGVRFELADSRSRKARLPKRTRVSWHGGPPVRSGERWRLAVTLRRPSGLLNFHGFDHEAWLLAQRIGATG
SVKDGERLVPARSALRDSLRQRLMTADAQSHEGALAALVLGDGSGLRAEQWQVLQDTGTVHLLVISGQHIGLLAGLIYAL
VAGMARYGCWPRSLPWLPWACGLAFAAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLAFNGVLLLEPL
ASLQPGFWLSFAAVAVLVLTFGGRLGPWGVWQAWTRPQWLIAIGLFPVLLVLGLPISLTAPVANLFAVPWISLVVLPLAL
LGTVLLWVPLIGDSLLWLAGGALEVWFQVLALLAGQLPAWTPAQVPLAYWLVSLLGAVMLLLPKGVPFRFLGWPLLLLAV
FPPGESVPHGQVMVVQLDVGQGQALILRTRNHALLYDAGPRSGSVDLGARVVLPSLKKLGIERLDMLLLSHADADHAGGA
PAIARGLPIRRVVGGETEGLPASLGAEPCSSGERWEWDGVSFALWQWSDATSGNAKSCVLQVQANGERLLLTGDIDSAAE
HALLDTPLAVPTDWLQAPHHGSRSSSSKPFVQRLAPKSVLISRGRGNAFGHPHSQVIERYKTQGSRIYDSAEQGAVRLQL
GAFQPAVVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=669192 MRY17_RS15100 WP_243352398.1 3415644..3417869(-) (comA) [Pseudomonas orientalis strain YB-76]
ATGAGGACAGGGATGTTCGCGCTGGCGCTGGGGTTATTGATCCTGCGGTTTCTACCGGCGTTGCCGCACGCCGGATGGCT
GCTGGTCATGTTGGTGCTGGCCTTGATGCTGCTGCCGTTTCGTACGTACCCGTTGGCGTTTTTCCTGCTCGGTTTGAGCT
GGGCGTGCATCAGCGCGCAGTGGGCACTGGATGATCGATTGCGACCTGCACTGGACGGTGAGACGCGTTGGCTGGAGGGG
CGTGTGGTCGGCTTGCCGCAACAGACGGACACCGGCGTGCGCTTTGAACTGGCCGACAGCCGGTCGCGCAAAGCCCGTCT
GCCTAAGCGCACCCGTGTGTCCTGGCACGGCGGGCCGCCGGTACGCAGTGGGGAACGCTGGCGCTTGGCTGTCACGCTCA
GGCGGCCGTCCGGCCTGCTCAATTTCCATGGCTTCGACCACGAGGCCTGGCTGCTGGCGCAACGCATCGGGGCCACGGGC
TCGGTGAAAGACGGCGAGCGCCTGGTGCCGGCCCGCAGCGCCTTGCGCGACAGCCTGCGTCAACGCCTGATGACCGCCGA
TGCGCAAAGCCACGAAGGCGCCCTGGCGGCGTTGGTGCTGGGTGACGGTTCCGGGCTGCGAGCGGAGCAATGGCAGGTGT
TGCAAGACACCGGCACCGTGCACCTGCTGGTCATTTCCGGCCAGCACATTGGCCTGTTGGCCGGGCTGATCTATGCGCTG
GTGGCCGGGATGGCACGTTACGGTTGCTGGCCGCGCAGCCTGCCATGGCTGCCGTGGGCCTGCGGCCTGGCCTTTGCCGC
AGCGCTGGGTTACGGCCTGCTGGCGGGGTTTGGCGTGCCGGTGCAGCGGGCCTGCGTGATGGTCGGGCTGGTGTTGCTCT
GGCGGCTGCGCTTTCGGCATTTGGGCGCTTGGTGGCCGTTATTGCTGGCGTTCAACGGCGTACTGCTGCTTGAGCCCCTG
GCCAGTCTGCAACCGGGCTTCTGGTTGTCATTTGCCGCAGTTGCGGTCCTGGTCCTGACCTTCGGCGGGCGGCTGGGGCC
CTGGGGTGTCTGGCAGGCATGGACGCGCCCCCAGTGGCTGATTGCTATCGGCTTGTTTCCGGTCCTGCTGGTGCTGGGGT
TACCCATCAGCCTCACCGCGCCCGTGGCCAATTTGTTCGCGGTGCCCTGGATCAGTCTGGTGGTGTTGCCTCTGGCGCTG
CTGGGCACGGTGCTGCTGTGGGTGCCATTGATCGGTGACAGTTTACTTTGGTTGGCTGGCGGGGCGTTGGAGGTGTGGTT
CCAGGTGCTGGCCCTGCTTGCCGGACAGTTGCCCGCCTGGACGCCGGCCCAGGTGCCGCTGGCGTATTGGCTGGTCAGCC
TGCTGGGCGCGGTGATGCTGCTGCTGCCCAAGGGGGTGCCGTTTCGGTTCCTGGGCTGGCCCCTGCTGTTGCTGGCAGTG
TTTCCACCCGGGGAGTCGGTACCCCACGGGCAGGTGATGGTGGTGCAATTGGATGTCGGCCAGGGGCAGGCGTTGATCCT
GCGCACCCGCAATCATGCCTTGCTTTACGATGCCGGGCCTCGTTCCGGGTCGGTCGATCTGGGCGCTCGTGTGGTGTTGC
CATCGTTGAAAAAGCTCGGCATAGAGCGGCTGGACATGCTGCTGCTGAGCCATGCAGACGCCGATCACGCCGGTGGCGCG
CCAGCCATTGCCCGTGGGTTGCCCATCAGGCGCGTGGTAGGCGGCGAAACCGAGGGGTTGCCGGCTTCTCTTGGAGCTGA
GCCGTGCAGCAGCGGGGAGCGGTGGGAGTGGGATGGTGTGTCGTTCGCGTTATGGCAGTGGTCTGACGCCACAAGCGGCA
ATGCCAAATCCTGCGTATTGCAGGTGCAGGCCAATGGCGAACGGCTGCTGCTCACCGGCGATATTGACAGCGCGGCGGAG
CACGCCTTGCTTGACACACCCCTGGCGGTGCCAACCGACTGGCTGCAAGCGCCCCATCATGGTAGCCGCAGCTCGTCGTC
CAAACCCTTTGTGCAAAGGCTTGCGCCCAAGTCGGTGCTGATTTCCCGAGGCCGGGGCAACGCCTTCGGTCATCCTCATT
CGCAAGTGATAGAGCGTTATAAAACCCAGGGCAGCCGGATATACGACAGCGCCGAACAAGGCGCCGTGCGTCTTCAGTTG
GGTGCCTTCCAGCCAGCAGTTGTTGCGCGCAGTCAACGCCGATTCTGGCGCGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.64

97.031

0.588
  comA Ralstonia pseudosolanacearum GMI1000

34.271

100

0.362

Multiple sequence alignment